Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g1308 ATGAGGAGGAACTGCAACTTAGAACTTCGTCTCTTCCCTTGTGACGATTCCGGCCACAGTAATCCCCAGAACCACAACATAATGTCGGGAGAAGGCAATGATAATGAGAGTGAGATGAGTCCAGAGGATCAGCAACAGAAGCTCACCATTTTCTATGATGGCAAAGTCAGCGTTTCTGATGTCACCGACCTTCAGGCGAGGAGGATAATGAAAGAAGCAGGGAAAGAGATGGAGGAGAAAATGAAGAGATCATTATCATCCCCATCATCTACACCACAGAATCAGAGTCAGATGTGTAACCCTAACACTGCCCTTTCCATGAAGAGATCTCTCCAACGTTTCCTTCAGAAGCGCAAGGATCGCATCCACGAATCTTCCCCTTACTATAATCCTTAA 396 0.4571 MRRNCNLELRLFPCDDSGHSNPQNHNIMSGEGNDNESEMSPEDQQQKLTIFYDGKVSVSDVTDLQARRIMKEAGKEMEEKMKRSLSSPSSTPQNQSQMCNPNTALSMKRSLQRFLQKRKDRIHESSPYYNP 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g1308 131 SMART tify_2 41 75 IPR010399 -
Lele35g1308 131 MobiDBLite consensus disorder prediction 75 109 - -
Lele35g1308 131 MobiDBLite consensus disorder prediction 17 35 - -
Lele35g1308 131 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 26 129 IPR040390 -
Lele35g1308 131 MobiDBLite consensus disorder prediction 84 109 - -
Lele35g1308 131 ProSiteProfiles Tify domain profile. 41 75 IPR010399 -
Lele35g1308 131 Pfam tify domain 43 73 IPR010399 -
Lele35g1308 131 Pfam Jas motif 108 129 IPR018467 -
Lele35g1308 131 MobiDBLite consensus disorder prediction 16 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g1308 Lele-ChrLele35 19175224 19176851 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g1308 1 130 Tify Gene Family AT1G30135 44.030 6.34e-25 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lele35g1308 tify 5e-11 No_clan