Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g1285 ATGTCTGAAAGACGGGTTTCTGATCCTAGCAAGCTTCATCTCAAGAAGAAGGACCTCACTCAAATTCGTAAAGCTGCTCGTGTGTTGAGGGATCCTGGTACGACGTCGTCCTGGAAGTCACCTCTTAGTTCCTCGAGATCCGTTACTGCTCGTTCTGCTTCTGCATGGAAGAGCAATTTCTACAGAGGAAAAGAGAATAGCGTGTCCTTGTGCAACTGGGAGAATCACAAATCATCAGGCGACAAGGGTGGAGTGGCAAAAAACGACGACGTAGAGGAAGAAGATGATGAGGATGCTGCTGCTGCTGGTGGTGGCAACGACGGGGCTTCTTCATCTCTTCTGGGAAGTTTCGAGGCTTCCTTGAGCGATGCTCGAGGTTGCGATTCGAAGAGCGACACTTACTTGCGAGATGAGAGACCTTCTTCTATCTTCCGGTGTAGAGACGCTAATCATCTTTCTTCGGCCAGAAGAAAAATGGGCAGTATCAAGAGAAAGAGTAAGAAAACTAACACATATTTGGATAACTTATCAAAATATCGGCAACCAGAAACCAATTTGGGTAGGAAGTTTGTAAATTCCAAGACATTTCTAGAAGACTCAATTGAACAGTCTGATGATACTGAAGATTACTGCAATTCTGAGGATTTAAGGCGAATTTTAGGTTCATCTCGTTTGCTGTTGAAACTCAAGCGTAAGAATTGGTCTCGTTCTTCCTCAAAGTTACTGAGAAGTAGCCGAACTGAGGACTCTTCTTATACTTATAGTACTCCTGCGTTATCAACCTGCTCTTATGATAGGTATGGTCACTATAATTCAAGTACTGTTGGATCCTGGGATGCCATGGCAAGCTCATTGAATGATGGCGATGATGAGGTAGACGATCTTTTGGATTTGCCTGGCCAGAGGGGATGCGGGATTCCTTGCTATTGGTCCAAGAGGACTCCAAAAAATAGAGGGATGTGTAGGACTTGCTGTTCTCCTTCTCTTTCAGAGACTTTGAGGAGGAAAGGAAGTAGCTTATTCTGTGGAAGTCAAAGTATCTATACAAGACACCGAAGGTCCTTATCAAGCTCTAACAAGTGGAGAGTTTCTTCAAGGAGCACTCAGGGTGTTCTTCCGCTGCTCACCAGCAGTGGTGATGTTAAAGGAGGGTCATCTGTAGGAACTGGAAGGAGTGATGATGAACTTTCCTCAAACTTAAGGGAACTTTATCTTGAGGGTTTAAGCAGGTTAGATGGAAGGAGATGGTCATCAAGTTGTAGGAGTCAAGATGGTTTGGAGATTGCGGCTGTAGATGGGGAAGGGGATGAGGAAGGCACACTAGAAAGTGCTACGAGTTTCAGTCAGAAGTATAAGCCTATTTCCTTTGGTGACTTGATTGGCCAGAATATTGTGGTTCAGTCACTTATGAATGCTATTTCAAGGGATAGAATTGCTCCCATTTATCTTTTCCAAGGTCCTCGTGGCACTGGTAAAACTTCAACAGCCAGAATTTTTGCTGCTGCCCTTAATTGTACAGCTCCTGATGTAAGTAAGCCTTGTGGATACTGCAGGAATTGCACTGATCTCAATTCTGGAAAGAGTAGGGATTTCTTGGAAGTTGATGGAACCAATAAGCAAGGGATTGATAGTGTTAGATATCTATTGAAAAGACTATCAGTAGGATCACCATCAGCCTCCTCATGGTACACTGTGTTTGTGATAGATGAGTGCCACTTGCTTCCTTCTAAGACATGGCTGGCATTTCTGAAGTTTTTGGAAGAACCAACTAGTCAAGTTGTGTTTATATTTATAACAACTGATCTTGACAATGTACCGCGGACAATACAGTCTCTATGCCAGAAGTACCTTTTTAACAAAATTAAAGATGGTGATATTGTGGCCAGACTAAGGACACTATCTGCTGAGGAGAACCTGGATGTTGAAAAAGATGCGCTGGACCTTATTGCTATGAATGCAGATGGTTCGCTTGAAGATGCAGAAACTATGTTAGAACAACTGAGTTTGCTGGGGAAAAGAATTACTACTTCACTTGTCAATGAACTTGTGGGTGTCGTCTCAGATGAAAAACTACTAGAGCTGTTGGAGTTAGCAATGTCATCAGATACCTCAGAAACAGTGAAGAGAGCCAGAGAAATGATGGATTCTGTGGCTGATCCAATGATTTTGATATCACAAATGGCATGCCTCATTATGGACATCATTGCTGGATCATATACTGTCATTGATGCCAAACCTAGTGATTCGTATTTTGGCGGACGAAGTCTGAATGAATTGAAGTTGGGGAGGCTAAATCATGCTTTGAAGCTGCTCTCAGAGGCTGAGAAACGTTTGAGGACTTCTAGTGAACGCTCAACATGGTTTACAGCTACTCTATTACAGCTTGGTTCAATGCCTTCACCAGATCTTACCCTGTCAGGCAGCGGCAGGAGACAGAGCTGCAAGGCTTCCGAATATGATCCATCAAGTGCTTCAAGAGAAGTTACTGCTCCAAAGCATAGTTCAGATGTCAGATATATTTCTCGAATGTCAACACCCCCCACATCCCAGCAATGGCCTTTGAATGGCAATTCCAGACATCAAAGGGATGTATCATCTAAGTCGGATGGTTTCAGCTCAAGTTCAAAGCCATCAAGTAGTCCATTTCTAGGAGATGATGATGCAACACCTGCTTCATCTGATGATCTTATTACTGGGAATATGATGTCAAGATGTGTAAATTCAGGCAAGTTACATGATATCTGGGCAAGTTGTATAGGGAGGTGTCACTCTAAGACATTGAGGCAGCTGCTCCACAATCATGGAAAACTTGTATCTATTTGTGAAGTTGAAGGTGTTCTGGTTGCATATGTTGCATTTGGAGATAAAGATATTAAAATTAGGGCTGAAAGGTTTTTGAGTAGTATTACAAATTCAATGGACATGGTACTCAGGTGCAATGTGGAGGTTATAATTATTCACTTGCCAGATGGTGAAGGTGAAAATCTACCTGGTATCATGCAGGCAGGATCAACAATGGGAAGTGAGAGGCATAAAAAAGGAGACCATGCAAATGAAAAGGGTAGTCATTCTAGTTTTCCTCCTTTGCTGGATGAAAACTTGCAGGCCATCATTGATTCATCAGATTTTACGGCTGGGAAAAACGGTGTAAGAGAGGATGAACAGGAAATTCCCACACAAAGAGTTGAATCTATTATACATGAGCAGAGGCTGGAAACTGCGTGGCTACAGGCTGTAGAAAAAGGTTCTCCGGGATCATTGAATCATGCAAGACCTGAGAAAAATCTGGTCCTGCCTCGGGAAAATGTTATCTGTAATGACCCAGTAGAGTCCATTGATTCAACAAGATTTTCCTTTCGGCATTGGGAAGATGACCCTCGTCATGAAGTCAAAGTTTTGAAAGTTAAACATGGAAGAATCATAAAAAATGGTCAGATTAGTAGAAATGGAGCTCGATGTCCCATGTCCCCAAGTTTATTGCATGGTAGCAGTTTAGCATCAAATTCCAACAAAGATAATCTGGGATATGAGTCAGGCTCCGGAGCTGGAGGTTGCATAGGACTTCTATGTTGGAATAACTGCAAGCGAAGAAGGAGGGAGTTTAGAACACAAAAAGTTGGACATTTTACATTATTTAGTGACTGGCAAGTCAACGAAAAAGGAGGTGAAAAGACGACGACGACAAGAAGGAAAAGACCGAGAGGCCGTGAAGCCATAGCAGCGAACAATGGCGAGGGGACATACCGGAGAGTTTTTCAGGACAAGAGACGCGTGGAGGAAGCACCCAATGCTTTCGAATCAGCTCCGACACGCCACCCCTGGACTTGGAATCGCCCTCGTGGCATTCGGCATTTACGTCGTCGGCGAACAAGAGTTCTTTGCTTGTTTGAAAAGCTTCGAATAAGGTTGAGTTCTTTGAAAAGTCATCCGATTTCTGTCTTGCCTTTGGATTTTGTGGCTCATTATCTCGCCTACATTGAGACGCTTAGTTGTTCTGCTTCAATTGCATTGCCTGCACTACCTACTGCAAAATCCCAATCCTCAGCCCTCTCAAGCAAACAAGCACGCATGCAAGCAATTTAG 4083 0.4328 MSERRVSDPSKLHLKKKDLTQIRKAARVLRDPGTTSSWKSPLSSSRSVTARSASAWKSNFYRGKENSVSLCNWENHKSSGDKGGVAKNDDVEEEDDEDAAAAGGGNDGASSSLLGSFEASLSDARGCDSKSDTYLRDERPSSIFRCRDANHLSSARRKMGSIKRKSKKTNTYLDNLSKYRQPETNLGRKFVNSKTFLEDSIEQSDDTEDYCNSEDLRRILGSSRLLLKLKRKNWSRSSSKLLRSSRTEDSSYTYSTPALSTCSYDRYGHYNSSTVGSWDAMASSLNDGDDEVDDLLDLPGQRGCGIPCYWSKRTPKNRGMCRTCCSPSLSETLRRKGSSLFCGSQSIYTRHRRSLSSSNKWRVSSRSTQGVLPLLTSSGDVKGGSSVGTGRSDDELSSNLRELYLEGLSRLDGRRWSSSCRSQDGLEIAAVDGEGDEEGTLESATSFSQKYKPISFGDLIGQNIVVQSLMNAISRDRIAPIYLFQGPRGTGKTSTARIFAAALNCTAPDVSKPCGYCRNCTDLNSGKSRDFLEVDGTNKQGIDSVRYLLKRLSVGSPSASSWYTVFVIDECHLLPSKTWLAFLKFLEEPTSQVVFIFITTDLDNVPRTIQSLCQKYLFNKIKDGDIVARLRTLSAEENLDVEKDALDLIAMNADGSLEDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTSETVKRAREMMDSVADPMILISQMACLIMDIIAGSYTVIDAKPSDSYFGGRSLNELKLGRLNHALKLLSEAEKRLRTSSERSTWFTATLLQLGSMPSPDLTLSGSGRRQSCKASEYDPSSASREVTAPKHSSDVRYISRMSTPPTSQQWPLNGNSRHQRDVSSKSDGFSSSSKPSSSPFLGDDDATPASSDDLITGNMMSRCVNSGKLHDIWASCIGRCHSKTLRQLLHNHGKLVSICEVEGVLVAYVAFGDKDIKIRAERFLSSITNSMDMVLRCNVEVIIIHLPDGEGENLPGIMQAGSTMGSERHKKGDHANEKGSHSSFPPLLDENLQAIIDSSDFTAGKNGVREDEQEIPTQRVESIIHEQRLETAWLQAVEKGSPGSLNHARPEKNLVLPRENVICNDPVESIDSTRFSFRHWEDDPRHEVKVLKVKHGRIIKNGQISRNGARCPMSPSLLHGSSLASNSNKDNLGYESGSGAGGCIGLLCWNNCKRRRREFRTQKVGHFTLFSDWQVNEKGGEKTTTTRRKRPRGREAIAANNGEGTYRRVFQDKRRVEEAPNAFESAPTRHPWTWNRPRGIRHLRRRRTRVLCLFEKLRIRLSSLKSHPISVLPLDFVAHYLAYIETLSCSASIALPALPTAKSQSSALSSKQARMQAI 1360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g1285 1360 FunFam DNA polymerase III subunit gamma/tau 442 620 - -
Lele35g1285 1360 FunFam DNA polymerase III subunit gamma/tau 622 684 - -
Lele35g1285 1360 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 471 667 IPR027417 -
Lele35g1285 1360 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 446 795 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Lele35g1285 1360 Gene3D - 623 684 - -
Lele35g1285 1360 CDD HLD_clamp_pol_III_gamma_tau 621 684 IPR045085 -
Lele35g1285 1360 MobiDBLite consensus disorder prediction 1003 1026 - -
Lele35g1285 1360 Gene3D - 438 619 IPR027417 -
Lele35g1285 1360 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 449 842 - -
Lele35g1285 1360 MobiDBLite consensus disorder prediction 72 109 - -
Lele35g1285 1360 MobiDBLite consensus disorder prediction 374 394 - -
Lele35g1285 1360 MobiDBLite consensus disorder prediction 838 886 - -
Lele35g1285 1360 MobiDBLite consensus disorder prediction 25 53 - -
Lele35g1285 1360 Coils Coil 764 784 - -
Lele35g1285 1360 MobiDBLite consensus disorder prediction 799 895 - -
Lele35g1285 1360 Pfam DNA polymerase III, delta subunit 461 621 - -
Lele35g1285 1360 MobiDBLite consensus disorder prediction 33 53 - -
Lele35g1285 1360 MobiDBLite consensus disorder prediction 799 830 - -
Lele35g1285 1360 CDD AAA 460 603 - -
Lele35g1285 1360 SMART AAA_5 478 640 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g1285 Lele-ChrLele35 18910087 18918854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g1285 440 736 Core DNA Replication Machinery Family AT1G21690 25.163 3.10e-13 70.9