Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g1280 ATGGAACTTTCTAGTCAAGAAGCAGAAATCCCAATGCCAATAAACAGTACTGCATATGGTGGGGAACATGGTAATGGCCCTGGGCCTGAGGGGCATGGGAACATGGCCCATCATCATCATCATCATCTCCACCACCACCAAGACCCTTCTAATGGCTCCTCCATTACACAACAACCAGCCCTTCAAGATCATCCTCGGGACCATGGACCCTACATGATGAAGAAGAAAGAGGTAAGGTACAGAGAGTGCCTTAAGAATCATGCAGCTTCCATGGGAGGTACTGCTCTTGATGGCTGTGGTGAGTTCATGCCTAGTGGAGAAGAAGGCACCATAGAAGCCTTAACCTGCTCAGCTTGCCACTGTCATAGGAATTTCCACAGAAAAGAAGTGGAAGGTGAGCCTTCTTATTACAAATTTGGAAGCAAATTCTTCTTGGGACATCATCATCACAAGAGTGTCCTAGCTTCCCCAGAAGCTCTTGTGGGGTACCCTACAGGCAACATTCTTCCTCCAAGAAGTGTACCACCGCACCAGATGATACTGCCCTACAATGTAGGGCCTGGGCCACTTCCTTCAGAATCAGATGAGCAAGAAGATGGTGGCGGTGGTGGTGGATTAATGCCAAGTAGGCCAGCATCATCATCACAAATAGTAAAGAAGAGGTTCAGGACAAAGTTCACACAGGAGCAGAAGGAGAAGATGCTGAATTTTGCAGAGAAAGTTGGGTGGAAGATTCAGAAGCAGGAAGAATCTGTTGTGCAACAGTTCTGTCAAGAGATTGGGGTCAGAAGAAGAGTGCTCAAGGTTTGGATGCACAACAACAAACACAATCTAGCCAAAAAGATTGATAATAATCCTCCACCACCCCCACCACCAACATCAACTACCACAACTGCTTAG 900 0.47 MELSSQEAEIPMPINSTAYGGEHGNGPGPEGHGNMAHHHHHHLHHHQDPSNGSSITQQPALQDHPRDHGPYMMKKKEVRYRECLKNHAASMGGTALDGCGEFMPSGEEGTIEALTCSACHCHRNFHRKEVEGEPSYYKFGSKFFLGHHHHKSVLASPEALVGYPTGNILPPRSVPPHQMILPYNVGPGPLPSESDEQEDGGGGGGLMPSRPASSSQIVKKRFRTKFTQEQKEKMLNFAEKVGWKIQKQEESVVQQFCQEIGVRRRVLKVWMHNNKHNLAKKIDNNPPPPPPPTSTTTTA 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g1280 299 MobiDBLite consensus disorder prediction 283 299 - -
Lele35g1280 299 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 79 130 IPR006456 -
Lele35g1280 299 FunFam Zinc-finger homeodomain protein 2 207 280 - -
Lele35g1280 299 MobiDBLite consensus disorder prediction 277 299 - -
Lele35g1280 299 Gene3D - 208 280 - -
Lele35g1280 299 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 219 275 IPR006455 -
Lele35g1280 299 Pfam ZF-HD protein dimerisation region 78 130 IPR006456 -
Lele35g1280 299 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 80 129 IPR006456 -
Lele35g1280 299 SUPERFAMILY Homeodomain-like 212 280 IPR009057 -
Lele35g1280 299 MobiDBLite consensus disorder prediction 1 70 - -
Lele35g1280 299 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 50 278 - -
Lele35g1280 299 MobiDBLite consensus disorder prediction 185 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g1280 Lele-ChrLele35 18872308 18873207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g1280 78 284 ZF-HD Transcription Factor Family AT2G02540 54.911 7.28e-77 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lele35g1280 ZF-HD_dimer 1.8e-29 No_clan