Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g1242 ATGGCGTCTGCAAGCCTTGGAAATGGTGGGGTCGGCAGTTCCAGGTCTGCTAATGGCTTCAGAGAGTCATCTAGTTCGGTGGATTGGCTTGGGAGAGAAATGCTTGAGATGAGGTTGAGGGACAAGGTGGACCATGATGAGGACAGAGATAGCGAGCCTGACATAATCGATGGTTTGGGTACTGAAACAGGACATGTTATAAGAACCAGCATTGGTGGTCGAAATGGCCAATCTAAGCAGAATGTCAGTTATATTGCGGAGCACGTGATTGGAACAGGTTCTTTCGGTGTTGTTTTCCAAGCAAAATGCAGAGAAACTGGAGAGATTGTGGCCATTAAAAAGGTTCTTCAGGACAAGCGCTACAAAAATAGGGAGTTGCAGATTATGCAAATGCTGGATCATCCAAATATTGTTGCCCTTAAGCATCATTTCTTTTCGACGACTGACAAAGAGGAGCTTTACTTGAATCTTGTGCTTGAATATGTTCCTGAAACTGTTAATCGTATTGCAAGGAATTATAGCAGGATCAACCAGCGAATGCCTTTAATATATGTTAAGCTTTACACCTACCAGATTTGCAGGGCTCTTGCATATATACATAATTGCATTGGAATTTGCCATCGTGACATCAAACCTCAGAATCTACTTGTGAATCCACATACTCATCAGCTGAAACTTTGTGATTTTGGAAGTGCAAAAGTGTTGGTGAAAGGAGAGCCGAATGTTTCTTACATCTGTTCAAGATATTATCGTGCTCCAGAACTTATTTTTGGAGCCACTGAGTATACAACCGCTATAGATATATGGTCAACTGGATGTGTAATGGCTGAATTACTTCTTGGACAGCCTTTGTTTCCTGGAGAAAGTGGAGTTGACCAACTTGTTGAAATCATTAAGGTTTTGGGAACTCCAACCAGAGAAGAGATAAAATGCATGAACCCAAATTATACTGAATTTAAGTTTCCACAGATTAAACCTCATCCATGGCACAAGGTCTTTCAGAAGCGGTTACCCCCTGAAGCGGTGGACCTTGTGTGTCGGTTCTTTCAGTATTCTCCCAATCTGCGTTGCACTGCTTTGGAAGCTTGCATTCATCCTTTCTTTGATGAATTGAGGGATCCAAACACCCGCCTTCCTAGTGGCCGGCCGCTTCCTCCTCTTTTTAATTTTAAAGCTGCAGAGCTCTCCGGCATACCGCAAGACGTCATCAATCGGCTTATTCCAGAGCATGCTCGTAAGCAGAACTTATTTATGGCTTTGCACACCTAG 1269 0.431 MASASLGNGGVGSSRSANGFRESSSSVDWLGREMLEMRLRDKVDHDEDRDSEPDIIDGLGTETGHVIRTSIGGRNGQSKQNVSYIAEHVIGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALKHHFFSTTDKEELYLNLVLEYVPETVNRIARNYSRINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPNTRLPSGRPLPPLFNFKAAELSGIPQDVINRLIPEHARKQNLFMALHT 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g1242 422 Pfam Protein kinase domain 86 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele35g1242 422 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 52 414 - -
Lele35g1242 422 MobiDBLite consensus disorder prediction 1 25 - -
Lele35g1242 422 Gene3D Phosphorylase Kinase; domain 1 69 163 - -
Lele35g1242 422 SUPERFAMILY Protein kinase-like (PK-like) 83 394 IPR011009 -
Lele35g1242 422 Gene3D Transferase(Phosphotransferase) domain 1 164 412 - -
Lele35g1242 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Lele35g1242 422 FunFam Glycogen synthase kinase-3 beta 68 163 - -
Lele35g1242 422 ProSiteProfiles Protein kinase domain profile. 84 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele35g1242 422 SMART serkin_6 84 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele35g1242 422 CDD STKc_GSK3 79 371 IPR039192 -
Lele35g1242 422 FunFam Shaggy-related protein kinase kappa 164 412 - -
Lele35g1242 422 ProSitePatterns Protein kinases ATP-binding region signature. 90 114 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g1242 Lele-ChrLele35 18582565 18587930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g1242 90 376 Core Cell Cycle Gene Families AT1G76540 35.117 2.09e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Lele35g1242 Pkinase 8.4e-65 CL0016