Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g1218 ATGATACTATTGGGCCATGAGCCCATTTCCAACAAGACGAAGAATCAGAACTTTGAAGAAAGGAGGGGGGAGAGAGAGATGGAGACACAGTTCAGTCACTCTCTCTTCGACAGGCACCACATCTTCAAGTCTAAGACTCCCGCCGTTAAATGGGTTAAAGAATGGGTTCCCCAGGATGTTGTGTCCACTGGTGGGAAGTGCATGCTTTACAGATGGGTAAGAGAGGATTCCTTAAAGGCCTTGAAGGATAAGGAAAAAGAACCATCAGTGCCTGAGCCAGAACCTGAGCCGACTACTGAAGTACTTTTTCTCTGTAGCTATGAAGGCTGTGGGAAAACTTTTATAGATGCGGGTGCTTTGAGAAAGCATTCTCACATCCATGGAGAAAGGCTATTTGTTTGTCACTATGAGGGTTATGGAAAGATCTGTGGAAAGATTATCAGATCTGCATTTAACAGTGTTCAGAATATTCATTTTCTGTTGCAGAAATTTCTGGATAGTTCAAAGCTGAAAAGACATTTTCTCATCCATACAGGGGAAAGGCCTTATGTGTGTCCCGTTGAAGGTTGTGGGAAGGCCTTCTCCCTTGATTTCAACCTCAAGTCTCACATGAAAACACATTCACATGAGAACTACCATGTCTGCAAATACCCAGATTGTGGAAAGAGGGATGTGGGGATTGGGCTGAGTTCTAAATTTGTTGTCCAGGTGGGCCTGAGTCTGAGGATGCATCCAATACTGTTTGGGGCTAGGCCAGGGTTTAGAAATGGATCTGTGGATCCGAATGGGACAAAGTATAATACTCCGCCTCCGGAGAAGCCGGCAAAAGCTACAAAACCTTCTAGTGGTGCTTATGCTTCTGCATCATCTGATCGTCCCTTTGTTTGTCCTTATGAAGGGTGTGAAAAGGCCTATATCCATGAATATAAACTAAAACTCCATTTGAAGAGGGAGCATCCTGGGCATGGGGATGAAAATGTTGCAGAGAATAATGCTCAGGCTAATAATAACAATGCCGACAATGAATTGGATGAAGCAAGCGATCAAGATGCCGCCTATAATGGTGGGAAACGATCAAATGGTAGAATTCAGAAGCAAAGTAAGCCCAAACCAAGCTTGAAGATGCCTCCATCAAAAGTTGCGCGGCGAAAAGCAGCATCGTCAACACCCTCTTCTGTGACCCCTATGAAGGTGATTAAGAAACCTTGGCCGGTGAAAGAAGAAACCTTCGAGGAAGAAGACAGTGAAGAAACAGAGGAGGATCGGGACAACGTTGAAGATGGTTGGAGATATGCAGGAAACAACGAGGATGATGATGAAGAAACAGAATATGAAGACTGA 1341 0.4444 MILLGHEPISNKTKNQNFEERRGEREMETQFSHSLFDRHHIFKSKTPAVKWVKEWVPQDVVSTGGKCMLYRWVREDSLKALKDKEKEPSVPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERLFVCHYEGYGKICGKIIRSAFNSVQNIHFLLQKFLDSSKLKRHFLIHTGERPYVCPVEGCGKAFSLDFNLKSHMKTHSHENYHVCKYPDCGKRDVGIGLSSKFVVQVGLSLRMHPILFGARPGFRNGSVDPNGTKYNTPPPEKPAKATKPSSGAYASASSDRPFVCPYEGCEKAYIHEYKLKLHLKREHPGHGDENVAENNAQANNNNADNELDEASDQDAAYNGGKRSNGRIQKQSKPKPSLKMPPSKVARRKAASSTPSSVTPMKVIKKPWPVKEETFEEEDSEETEEDRDNVEDGWRYAGNNEDDDEETEYED 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g1218 446 Gene3D Classic Zinc Finger 182 213 - -
Lele35g1218 446 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 290 410 - -
Lele35g1218 446 FunFam zinc finger transcription factor YY1 103 128 - -
Lele35g1218 446 ProSitePatterns Zinc finger C2H2 type domain signature. 185 209 IPR013087 -
Lele35g1218 446 Gene3D Classic Zinc Finger 271 339 - -
Lele35g1218 446 FunFam Zinc finger protein 410 181 208 - -
Lele35g1218 446 Gene3D Classic Zinc Finger 103 127 - -
Lele35g1218 446 Coils Coil 329 349 - -
Lele35g1218 446 SMART c2h2final6 183 207 IPR013087 -
Lele35g1218 446 SMART c2h2final6 294 319 IPR013087 -
Lele35g1218 446 SMART c2h2final6 103 127 IPR013087 -
Lele35g1218 446 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 127 IPR013087 -
Lele35g1218 446 ProSitePatterns Zinc finger C2H2 type domain signature. 105 127 IPR013087 -
Lele35g1218 446 Gene3D Classic Zinc Finger 128 181 - -
Lele35g1218 446 MobiDBLite consensus disorder prediction 409 423 - -
Lele35g1218 446 MobiDBLite consensus disorder prediction 320 446 - -
Lele35g1218 446 ProSitePatterns Zinc finger C2H2 type domain signature. 296 319 IPR013087 -
Lele35g1218 446 MobiDBLite consensus disorder prediction 1 22 - -
Lele35g1218 446 ProSiteProfiles Zinc finger C2H2 type domain profile. 294 324 IPR013087 -
Lele35g1218 446 ProSiteProfiles Zinc finger C2H2 type domain profile. 183 212 IPR013087 -
Lele35g1218 446 SUPERFAMILY beta-beta-alpha zinc fingers 289 317 IPR036236 -
Lele35g1218 446 MobiDBLite consensus disorder prediction 328 342 - -
Lele35g1218 446 Pfam Zinc finger, C2H2 type 183 207 IPR013087 -
Lele35g1218 446 SUPERFAMILY beta-beta-alpha zinc fingers 164 222 IPR036236 -
Lele35g1218 446 MobiDBLite consensus disorder prediction 258 291 - -
Lele35g1218 446 SUPERFAMILY beta-beta-alpha zinc fingers 104 128 IPR036236 -
Lele35g1218 446 FunFam Zinc finger transcription factor YY1 269 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g1218 Lele-ChrLele35 18395370 18399720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g1218 36 432 C2H2 Transcription Factor Family AT4G06634 52.941 1.18e-107 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele35g1218 zf-C2H2 0.00017 CL0361