Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g1216 ATGGCTCTGTGGAGAGCTCGCGCAGCTTCGTCTGTGTTTTCGAGAATCGGCAGCCTCAACCTCCTGAAGCCCTTCTCATTCCTCAACAATGCTTCTCGCAATTTCTCTTCTGATTCTGCAAATGCATATTCTCGTAGTGCACATGAGAGTATGGTGAATCAAATGATGTTTTCTGACATAAATGCGCAAATTGGGAGTTGCATGCCGCTTAATGCAATGCGAATTGGGACAATCATTCATAACATTGAGATGAACCCAGGGCAAGGCGGCAAACTGGTCCGATCAGCTGGGACTTGGGCAAAGATATTGAAAGATCCTTCACAAAGATATGTCTTAATTGAACTCCCTTCAAAAAAGACAAAGTTGATTGATTCTCGTTGCAGGGCTACAATCGGCAGAGTGTCAAATCCAACCCATGGAGATCGGGAGCTTAGGAAGGCTGGGCAGAGCCGGTGGCTTGGTCGAAGGCCCGTAGTTCGAGGAGTGGCCATGAATCCCGTAGACCATCCTCATGGTGGAGGAGAGGGTAAGAGCAAGAGTAGTGGAAAATATGGGAGAGTTTCTGTTTCTCCTTGGGGCAAACCAACTAAGGGTGGATACAAAACTGGCCCACTCAAGCGCAGAAGGTAG 630 0.4794 MALWRARAASSVFSRIGSLNLLKPFSFLNNASRNFSSDSANAYSRSAHESMVNQMMFSDINAQIGSCMPLNAMRIGTIIHNIEMNPGQGGKLVRSAGTWAKILKDPSQRYVLIELPSKKTKLIDSRCRATIGRVSNPTHGDRELRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGKYGRVSVSPWGKPTKGGYKTGPLKRRR 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g1216 209 ProSitePatterns Ribosomal protein L2 signature. 157 168 IPR022671 GO:0003735|GO:0005840|GO:0006412
Lele35g1216 209 MobiDBLite consensus disorder prediction 163 209 - -
Lele35g1216 209 SUPERFAMILY Translation proteins SH3-like domain 64 199 IPR008991 -
Lele35g1216 209 PANTHER RIBOSOMAL PROTEIN L2 55 208 IPR002171 GO:0003735|GO:0005840|GO:0006412
Lele35g1216 209 Pfam Ribosomal Proteins L2, C-terminal domain 64 193 IPR022669 GO:0003735|GO:0005840|GO:0006412
Lele35g1216 209 TIGRFAM rplB_bact: ribosomal protein uL2 58 204 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Lele35g1216 209 Gene3D Ribosomal protein L2, domain 3 135 209 IPR014726 -
Lele35g1216 209 SMART Ribosomal_L2_C_2 62 195 IPR022669 GO:0003735|GO:0005840|GO:0006412
Lele35g1216 209 FunFam 50S ribosomal protein L2 135 209 - -
Lele35g1216 209 FunFam 60S ribosomal protein L2, mitochondrial 58 134 - -
Lele35g1216 209 Gene3D - 58 134 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g1216 Lele-ChrLele35 18382063 18383792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g1216 61 174 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 40.000 9.66e-23 90.9