Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g1210 ATGCCTTTGTCTATTACCGAGCGGAAGGGTTCAGCAGAGGAAATTAAAATGGCCCTGAGAATTTTTCGAGAAGTTCACTTTTATTTATGGTTATTGCGTTGTTGTGTAGGGAGACATGGGGCAATGGCCATTATTAGTCAAACCAATTCAGCCAGTGATGGACTTCCTAAAGTCAATTGGTTGGATCATGCCAGTGCACATGAGAACTTTTCATGTCAAAACAAGTTTTTGAGATCCAATTTTCTATTCTCCTTGCCAACTCAAAAACCATGCTCTGAAGAAGCTTTGTGTGGGAGATTTGTACTCAGTCAAAATGAAAATATTCAAAGTTTGCAGAGAGCACAAGTTGAGAAGGCTTGGCGTTCTCTTTCAAGTCTACAGAATTCTTTCCGGAACTATGCCCAACTGGGAAAAACTGTACAAATAAGTACTCCGACTTTTGCTGACATGAGATCAACTACAGGGCAGAGAATTTCTGACAATGATAGATGTTCTAAGTTTAATAATTTTAACGTCTTAAGTGAAAACAATGTGAAATCTAATCAATACTTTCCATCAAGTAATCCTATAGCTGAAGGAGGGGATAGATTGAAGTGCCTTGATGAAGTCACAACTCCAACAGTCAATAATCATTGTTCTCAAGTTTTGGATGGTTCAGTGAAAAACTGTACTAAGTACACTGCTGAAGTTAACAGGTCAACAAATTGTATGGCTAACAACATTGAAGACGATGACGACGTCATACTTGGGAGCATTGATGTTGACCAAATAGTGGAAAACTACCAGTCGACTTGCACTCCTCAACCATCAACAGCCAAGTTTCCTCCTATTTCTCCAACTGTTGATGCAAATAGTTTTGCTAGACAAGGGGAACATGGTTTGCCACCGGACTTGTGCTCAGATTGCATTCATGGTTATAAGGTAGCGCTTTGCCCCGAAGCAGCAAACCATTTGCAGGAGTGGAAGGACAATCTGATTGCTATCTCCAATGAACTGCTTGACAATGTTGACAGCCTCAATTCTTCACAGATAGCAAAGCTTCGCCAAGACAGGTTACAGTTAAATAAGCAAATTCAGCAGCTTGAAAGATATATTCAATCCTGTAAGCTTGATGAGGAGAGACAAAACTCACATTTTTCTGCGTCCACAGCACCTCCAACTTCTTTTCAGTTTGAGACACCAAATCAAACTGTACTCAGGAGTGGATCAATGAGATATGATGCCCAGGCTTATATGAATAATGAGCCATTCGGAGCATCATTCCAGTCATTGTCATTCTCTTCTGTTGATAAGTATGGCATGTCGTCAGGCCCAATGGAGAGAGAAACATTTATTCCAAAGATAATTGATGTTAATTACATTGAAGGTTCTGGAGACAAACGCTGGAGTGACCAAAATTTTTCTTGGACAAAAAAGCTGGAGGCCAATAATAAAAAGGTTTTTGGAAATCATTCATTCCGCCCCAATCAGAGAGAGGTTATTAATGCCACAATGAGCGGATGTGATGTTTTTGTCTTAATGCCTACAGGTGGAGGGAAGAGTCTGACCTACCAGCTACCTGGTCTCATTTGTCCAGGTATAACTTTAGTAGTCTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCATCTGTTGCAGGCAAATATTCCTGCTACATACTTAAGTTCGAATATGGATTGGTCCGAACAACAGGAGATCCTGAGAGAAATTAATTCTGATTATTGTAAATACAAGTTCTTATATGTAACACCTGAAAAGGTTGCCAGAAGTGATGTTCTTTTGCGGCAATTGGAGAGTTTACATGTCCGTGAGTTGCTTGCTAGGATTGTAATTGATGAAGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGCCTTGGTATATTGAAACAAAAATTTCCCAATACTCCTGTTCTAGCTTTGACAGCTACAGCAACAGCCAGCGTAAAAGAAGATGTTGTTCAAGCTCTTGGTCTTGTCAACTGCATTGTTTTCCGGCAAAGTTTTAATCGCCCAAACTTATGGTACTCTGTTGTCCCCAAGACAAGAAAGTGTTTGGAGGACATTGATAAATTCATTAGGGAAAATCACTATGACGAATGTGGCATTATTTATTGCCTTTCACGAATTGACTGTGAAAAAGTTGCTGAAAAATTACAGGAATGCGGACATAAAACTGCATTTTATCATGGTAGCATGGATCCTGCTCAACGAGCCTTTGTTCAAAAGCAATGGAGCAAAGATGAAATCAATATAATGTGTGCTACTGTGGCATTTGGAATGGGAATTAACAAACCTGATGTTCGCTTTGTAATTCATCACTCTCTCCCAAAATCTATTGAAGGCTACCACCAGGAGTGTGGACGAGCTGGTAGAGATGGTCAACGCTCATCCTGTGTATTATATTATAGCTATAGTGACTATATTCGAGTTAAGCACATGATAACTCAAGGAGCAATAGAGCAAAGTCCAATGGCATCTGGATATAATCGATCAAATTTGACAAATTCAGGGAGGATGCTAGAAACTAACTCTGCAAACCTTCAGCGGATGGTAAGCTATTGTGAAAATGATGCTGATTGTAGACGACTTCTGCAGCTTGCTCATTTTGGGGAGAGGTTTGATCCTTCAAACTGTAAGAAAACATGTGACAACTGTTTGAAGATCAAGAGTTTTATTGAGAAGGATGTCACAGAGATCGCAAAGCAATTGGTTGAGCTAGTTAAGATAACGGGGCAGAATTTTTCATCATCTCATATCTTAGAAGTGTACCGGGGTTCCTTAAACCAGTTTGTCAAGAAACACCGGCATGAAACAGTACGGCTTCATTGTGCTGGGAAGCATCTAGCTAAGGGAGAGGCTTCCCGTGTATTGCATCATCTTGTTATTGAAGATTTTCTTGTGGAGGATGTAAAGAAAAGTGATATTTATGGATCAATCTCATCAATATTAAAGGTCAATGAGTCCAAGGTCCGTAATCTGTTTGGGGGCCAGAAAATTATATTAAGAGTTCCTTCCTCGCAAAAAGCTTCAAAGTTGGGAACTTGTGGCATAACACCAGCTAAAGGCTCTCTGACATCTGGGAAGGTGAATTTACCACAAAATGATTCTCCTGCCTCGCCTCAAGCTGAAGTGGACTTGAATCTTTCAGCTAAGTTGTTCTCTGCTCTGCGGATGCTGCGGACAGCTATTGTCAAAGAAGCTGGAGAGGGAGTCATGGCCTACCACATTTTTGGAAATGCTACGCTGCAGCAGATAAGCAAGAGATTACCAAGAACAAAAGAAGAGCTCCTTGAGATCAATGGCATTAGCAAGACCAAGATAAACAAGTATGGAGATCGGGTACTGGAAACCATTGAAAATACCATGAGGGAATATAACAAGTTGGACAAAAGCAGCAGCTGGAGCAACGAGAGTAATGACTCTGCTAAAAGGAGACGAGCTGTAAAAGGGAATGATGATGATGAAGATGACGGGACTAGAAGTAATGGTCGTTCAAAGAAAAGGACGATAAAGAGAAACAATATAAAAGCTGTGGTTTATGATGATTCTGCAGAAGAAGATTTTAAAGATTGCCAAGACGAAGATCTAGATTTTAACAACATAGAAAATACTGCAGTGGATATTAATCGTAGGAATTCCGAAGGCAGGGTCCTTCCTCAATGGACATAG 3690 0.4033 MPLSITERKGSAEEIKMALRIFREVHFYLWLLRCCVGRHGAMAIISQTNSASDGLPKVNWLDHASAHENFSCQNKFLRSNFLFSLPTQKPCSEEALCGRFVLSQNENIQSLQRAQVEKAWRSLSSLQNSFRNYAQLGKTVQISTPTFADMRSTTGQRISDNDRCSKFNNFNVLSENNVKSNQYFPSSNPIAEGGDRLKCLDEVTTPTVNNHCSQVLDGSVKNCTKYTAEVNRSTNCMANNIEDDDDVILGSIDVDQIVENYQSTCTPQPSTAKFPPISPTVDANSFARQGEHGLPPDLCSDCIHGYKVALCPEAANHLQEWKDNLIAISNELLDNVDSLNSSQIAKLRQDRLQLNKQIQQLERYIQSCKLDEERQNSHFSASTAPPTSFQFETPNQTVLRSGSMRYDAQAYMNNEPFGASFQSLSFSSVDKYGMSSGPMERETFIPKIIDVNYIEGSGDKRWSDQNFSWTKKLEANNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPGLICPGITLVVSPLVSLIQDQIMHLLQANIPATYLSSNMDWSEQQEILREINSDYCKYKFLYVTPEKVARSDVLLRQLESLHVRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLWYSVVPKTRKCLEDIDKFIRENHYDECGIIYCLSRIDCEKVAEKLQECGHKTAFYHGSMDPAQRAFVQKQWSKDEINIMCATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMITQGAIEQSPMASGYNRSNLTNSGRMLETNSANLQRMVSYCENDADCRRLLQLAHFGERFDPSNCKKTCDNCLKIKSFIEKDVTEIAKQLVELVKITGQNFSSSHILEVYRGSLNQFVKKHRHETVRLHCAGKHLAKGEASRVLHHLVIEDFLVEDVKKSDIYGSISSILKVNESKVRNLFGGQKIILRVPSSQKASKLGTCGITPAKGSLTSGKVNLPQNDSPASPQAEVDLNLSAKLFSALRMLRTAIVKEAGEGVMAYHIFGNATLQQISKRLPRTKEELLEINGISKTKINKYGDRVLETIENTMREYNKLDKSSSWSNESNDSAKRRRAVKGNDDDEDDGTRSNGRSKKRTIKRNNIKAVVYDDSAEEDFKDCQDEDLDFNNIENTAVDINRRNSEGRVLPQWT 1229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g1210 1229 Pfam HRDC domain 1057 1125 IPR002121 GO:0003676
Lele35g1210 1229 FunFam Bloom syndrome, RecQ helicase 677 897 - -
Lele35g1210 1229 Gene3D - 451 676 IPR027417 -
Lele35g1210 1229 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 694 837 IPR001650 -
Lele35g1210 1229 SMART helicmild6 719 800 IPR001650 -
Lele35g1210 1229 ProSiteProfiles HRDC domain profile. 1053 1135 IPR002121 GO:0003676
Lele35g1210 1229 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 478 953 IPR004589 GO:0004386|GO:0006310
Lele35g1210 1229 Coils Coil 344 371 - -
Lele35g1210 1229 Pfam RecQ zinc-binding 811 893 IPR032284 -
Lele35g1210 1229 Pfam Helicase conserved C-terminal domain 693 799 IPR001650 -
Lele35g1210 1229 SMART hrdc7 1053 1135 IPR002121 GO:0003676
Lele35g1210 1229 Pfam RQC domain 899 1015 IPR018982 GO:0006260|GO:0006281|GO:0043138
Lele35g1210 1229 MobiDBLite consensus disorder prediction 1146 1171 - -
Lele35g1210 1229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 675 943 IPR027417 -
Lele35g1210 1229 PANTHER DNA HELICASE RECQ FAMILY MEMBER 458 1140 - -
Lele35g1210 1229 SMART ultradead3 482 685 IPR014001 -
Lele35g1210 1229 CDD DEXHc_RecQ 474 676 - -
Lele35g1210 1229 FunFam ATP-dependent DNA helicase RecQ 459 676 - -
Lele35g1210 1229 Pfam DEAD/DEAH box helicase 488 656 IPR011545 GO:0003676|GO:0005524
Lele35g1210 1229 Gene3D - 896 1017 IPR036388 -
Lele35g1210 1229 SUPERFAMILY HRDC-like 1056 1129 IPR010997 GO:0000166|GO:0044237
Lele35g1210 1229 MobiDBLite consensus disorder prediction 1135 1176 - -
Lele35g1210 1229 ProSiteProfiles Rhodanese domain profile. 709 751 IPR001763 -
Lele35g1210 1229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 461 818 IPR027417 -
Lele35g1210 1229 Gene3D HRDC domain 1049 1136 IPR044876 -
Lele35g1210 1229 SMART RQC_2 902 1012 IPR018982 GO:0006260|GO:0006281|GO:0043138
Lele35g1210 1229 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 608 617 IPR002464 -
Lele35g1210 1229 Gene3D - 677 895 IPR027417 -
Lele35g1210 1229 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 494 669 IPR014001 -
Lele35g1210 1229 CDD SF2_C_RecQ 677 809 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g1210 Lele-ChrLele35 18325234 18334242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g1210 708 831 Eukaryotic Initiation Factors Gene Family AT3G19760 25.197 3.43e-07 52.4