LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele35g1203	ATGAAGATTTTTGTGGTGCTTCTCTTTCTCTCCTTCTACATGTTTGTTACTCTCAGCTCTGCAGATTCTTCGTCTTCTTCTCCCTCTGTTAAGAATTCCACGTGCCCCATGGATCTGAACTATGTGCTGAGAATCCCGTGGAACTCTTCCATGTGCCAAAACTTCCATACTTTGGATTCCGTTGGCGACACTCGAAGAAGCCATTGTTGCCAAACTTTACTTTCCTTAATTGGCATAGGGCTTGCTCAACACCTTAAAGAAACCTCCATGTTCAACCTCCCAGATCTTCGTACCTCCAATTCTTGCCTCCATGACTTCCAATCTAAGCTCTCTTCCCTCTCTCTCCCTGATTACCTCACCTCCGCTTGCTTTGACCCGATTCAATTTGTTGTTAGCCGCAACGTCTGCGCCGAAATACAAACGATTCCTGATTGGGTCGGGAAGCTCGGAGAAACGACGCCGCTTAACCGGGGATGTAAACCGGACCTTACTGATCTTACTCTTTGTGGCGCATGCGTGGCGGCGGGGTTTCAGGTTCAGCAGGAACTCACAAACATTGATGGTAACTCTTCCCACGCCACAAATTGCTTTCAATATGCTATTTTGTATGCTGCTGGTATTGTGAATGAGTTTGGGCCGGAGAATAATGGTGCTGTGACATGCATTTTTGGCATGTCAGTTTATTCAACTTCGGATTCTGGAGGAAGTGGTCGCCATCAAGCTCTTGTGTTTGGGATAACCGGAGCTTCGGTTGGATTGTTAGTCATGTTCGCTTTGTTGGGTTTGTATATATGGTATGATAGGAAGTGGAGGAGGAGAAAACATGAGAATTTTGGGTTTGATATTGATCCTGAAGAGCAAGGATCTAGGCGTAGATTGAGGCCGAATACTGGATCAATCTGGTTTAAGATCAAGGAGCTCGAGAAGGCTACTAATGGTTTCTCATCTAAGAACTTCATAGGAAGAGGTGGATTCGGGATGGTTTACAAGGGAGCTTTGGCTGATGGATCAATGGTCGCGGTTAAAAGGATCTTGGAATCCGATTATCAAGGGGATGCTGAGTTTTGCAATGAGGTTGAGATCATTAGTAATCTGAAGCACCGTAATCTGGTACCACTTAGAGGGTGCTGTGTGGGGGACGAGGGTGAGACTTATGAGGAAAGAAATCAAAGATATCTTGTTTATGACTACATGCCAAATGGTAACCTTGAAGACCATCTCTTCTCATCATCATCAGTGGGCAATCAGAATGAAAAGAGATCATTGACTTGGCCACAGAGAAAAAGCATAATCTTGGATGTGGCAAATGGGTTGGCTTACTTGCATTATGGAGTTAAGCCTTCAATTTATCACAGAGACATCAAGGCCACCAATATACTACTTGACGCCGATATGAGGGCAAGAGTTGCAGATTTCGGGCTTGTTAAGCAGAGCAGGGAAGGTCAGTCTCATCTCACTACTAGAGTTGCCGGAACTCATGGATATCTAGCCCCGGAGTATGCACTATATGGTCAGCTTACTGAGAAGAGTGATGTCTATAGCTTCGGTGTGGTTGTTTTGGAGATAATGTGTGGGAGAAAAGCTCTTGATTTGTCTTCATCAGGATCTCCAAGGGCATTCTTGATCACAGATTGGGCATGGTCATTGGTTAAATCTGGGAACATAGATGAGGCATTAGACGCTTCCCTTGTAGAAGATGGCGAATGTCCTAGTTCGAATCCTAAGAGCATAATGGAAAGGTTTTTGCTTGTGGGGATTCTATGTTCTCATGTGATGGTTGCTTTGAGGCCAACGATTTCTGAAGCTTTGAAGATGTTGGAAGGTGATGTCGAAGTTCCAGAAATCCCCGACCGGCCTTTGCCTCTCGGGCATCCTTCGTTTTACAATGATGGTAACAATACTTTTAGCATATCTCCAGCATTAAGCGGCCCAAAATTGCATAGTGGAGACATGCTTAGGCTGATGGCAATGCTTATAACAGGTTCATGGGAGATAGTTGAGCACTACAGAAGGATCTGA	2019	0.4487	MKIFVVLLFLSFYMFVTLSSADSSSSSPSVKNSTCPMDLNYVLRIPWNSSMCQNFHTLDSVGDTRRSHCCQTLLSLIGIGLAQHLKETSMFNLPDLRTSNSCLHDFQSKLSSLSLPDYLTSACFDPIQFVVSRNVCAEIQTIPDWVGKLGETTPLNRGCKPDLTDLTLCGACVAAGFQVQQELTNIDGNSSHATNCFQYAILYAAGIVNEFGPENNGAVTCIFGMSVYSTSDSGGSGRHQALVFGITGASVGLLVMFALLGLYIWYDRKWRRRKHENFGFDIDPEEQGSRRRLRPNTGSIWFKIKELEKATNGFSSKNFIGRGGFGMVYKGALADGSMVAVKRILESDYQGDAEFCNEVEIISNLKHRNLVPLRGCCVGDEGETYEERNQRYLVYDYMPNGNLEDHLFSSSSVGNQNEKRSLTWPQRKSIILDVANGLAYLHYGVKPSIYHRDIKATNILLDADMRARVADFGLVKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSSSGSPRAFLITDWAWSLVKSGNIDEALDASLVEDGECPSSNPKSIMERFLLVGILCSHVMVALRPTISEALKMLEGDVEVPEIPDRPLPLGHPSFYNDGNNTFSISPALSGPKLHSGDMLRLMAMLITGSWEIVEHYRRI	672

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele35g1203	672	FunFam	probable LRR receptor-like serine/threonine-protein kinase RKF3	398	614	-	-
	Lele35g1203	672	Pfam	SPARK	31	197	IPR043891	-
	Lele35g1203	672	FunFam	probable receptor-like protein kinase At1g11050	274	397	-	-
	Lele35g1203	672	ProSiteProfiles	Protein kinase domain profile.	314	627	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele35g1203	672	Pfam	Protein kinase domain	316	532	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele35g1203	672	Gene3D	Phosphorylase Kinase; domain 1	285	397	-	-
	Lele35g1203	672	SMART	serkin_6	314	606	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele35g1203	672	ProSitePatterns	Protein kinases ATP-binding region signature.	320	342	IPR017441	GO:0005524
	Lele35g1203	672	SUPERFAMILY	Protein kinase-like (PK-like)	294	607	IPR011009	-
	Lele35g1203	672	Gene3D	Transferase(Phosphotransferase) domain 1	398	614	-	-
	Lele35g1203	672	CDD	STKc_IRAK	320	608	-	-
	Lele35g1203	672	PANTHER	OS01G0750732 PROTEIN	51	614	-	-
	Lele35g1203	672	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	449	461	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele35g1203	Lele-ChrLele35	18259320	18261928	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele35g1203	25	653	Receptor kinase-like Gene Family	AT1G11050	64.706	0.0	797

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RKF3	Lele35g1203		Pkinase	8.9e-43	CL0016