Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g1190 ATGAATAATCCTCCTAATAATTCACAACCTTCACCTGCTGCTCAGTTGATCAATGCATTGGGTCTCATTCTGGATCCATCTGCGAGAGAGCGAAACACTCGATTGCATCGAACAGTTCAACGGATTGAAGAAACCGAAGAAGGACCGAATCCTCAGACCTGGATCACTCTCCGATTTGTGAGACCAACTCGTCCAGAAAGACACATTCCGGGAACCACCGACGACAACAGGCCGCCTCCGGCAGCAGATTCCGCCATCGAAGGGTTGCCGACCGTGACACTAACGGAAACGCGATTGGCGAGCGATCCGAATTGCGCGATCTGCAAAGACGAATTTCAGATTGATATGGAAGTGAAAGAGTTACCGTGCAAGCATTTATATCATTCGGATTGTATTACTCCTTGGCTTCGCATTCACAATACGTGTCCAATCTGCCGCCACGAGCTGCGAAGCGCTTCGCCTTCTTCTTCTTATTATTATTATAATTACCGTCGTGAAGATGATTTCTCACATTTTGACTATCGATATGGATTTAGGTTTGAAGAAGCTGCCCACGGTTTGAATTGGCTTTGGAGCCAGCTGGGTTCTTTGCGACCTGTGCGTGCAGTTATGGAATGGACTCAGAGATATTTGTTTGATTTCCGTGAAAATCATGATCGTTCCGGAGTCTCTGGGCTTGGGAAATGCAAGATGCAGATTCATAAGAAATTGAAGAAGCAAAACACAGGGCATACAAATTTCTAG 744 0.461 MNNPPNNSQPSPAAQLINALGLILDPSARERNTRLHRTVQRIEETEEGPNPQTWITLRFVRPTRPERHIPGTTDDNRPPPAADSAIEGLPTVTLTETRLASDPNCAICKDEFQIDMEVKELPCKHLYHSDCITPWLRIHNTCPICRHELRSASPSSSYYYYNYRREDDFSHFDYRYGFRFEEAAHGLNWLWSQLGSLRPVRAVMEWTQRYLFDFRENHDRSGVSGLGKCKMQIHKKLKKQNTGHTNF 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g1190 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 152 IPR013083 -
Lele35g1190 247 SMART ring_2 105 145 IPR001841 -
Lele35g1190 247 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 47 149 - -
Lele35g1190 247 SUPERFAMILY RING/U-box 85 152 - -
Lele35g1190 247 Pfam Ring finger domain 104 146 IPR001841 -
Lele35g1190 247 FunFam E3 ubiquitin-protein ligase RING1-like 70 152 - -
Lele35g1190 247 CDD RING-H2_RNF126_like 105 146 - -
Lele35g1190 247 ProSiteProfiles Zinc finger RING-type profile. 105 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g1190 Lele-ChrLele35 18151655 18153508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g1190 54 215 C3H Transcription Factor Family AT1G68180 37.288 4.82e-26 100