LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele35g1180	ATGAGAAGAGAGAAAGTTGCAGAGATCATGGGAATTGATCTCTCTCTGAAGATTAATGATGCTAAACCAAAAGAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAGAGAAGAGGAGAGAGAAAGAAGAATATTATTTGATGAGAAGGGAAAGGAGAAGAAGGATAATAAGGAAGAAGAAGCAGCTGAACAGATCACAGAAGGTGAAATAGAAGACGATGATGATGCATCAGTTGAAGAAGATGAAAGCCTAGCCTCCACCAAGGTCCGTATAGTAATTTCAAAGTTTTTTTCTGTGTTATGTATATCTTCAACATTACAATCAACAATAATCAAGTTGGCTCTTTGGACAAATTTCATTACATATGATGCATATTCTGAGCTAAGAGAGTTAAAAATGGAGATGGATTGTCTAAAAGAGGAAAACAAAGTGTTGAGGATAGTGGTGGAGCAAACCATGAAAGATTATTACCATCTCCAAATCAAATTCGCAGACATCCATCCTCCTCTCAACAATATTATTAACAAAAAGGATCCTCAAATCTCTCTCTCACTTCAAGGCAACAATAATAATAATATTGGAAACACAAGCACAAGTAGTGAAGAAGGACCACTACCACCACCGACAAGAATACCTCTTTCTTCAAACGCTAATATTAAGGATAGTATTAGTGAGAATGATTTGGGATTATCACTAAGGTTACATACAAGTGCAGAAGACCATCATCATCAAGATCGAGGCAATATTATTATTAATAATCACGAACAAGAATTGTTGGCTTCTTCTTCTTCGTCACTGCAAAACAATAAGCTGATCGATAATGGGATTCATCATCATCATCACTTGCCTGCTGTTACTGCTTCTCCTCCAAATAGAAAGACTAGGGTTTGTGTTAGAGCAAGATGTGACACAGCCACTATGAATGATGGGTGCCAGTGGAGAAAATATGGGCAAAAAATTGCTAAAGGAAATCCGTGTCCTCGTGCCTATTATCGATGTACTGTAGCTCCAGGATGCCCTGTAAGGAAACAGGTACAAAGATGTATAGAGGACATGTCAATCCTAATAACAACCTACGAAGGAACACATAATCATCGTCTACCTGTAGGTGCAACAGCCATGGCTTCTACTGCTTGCACAGCAGCTTCCTTCATGTTCCTTGACTCTTCTTCACAACCCTCTGCTTCTTCTTCCACTGCTTTCAGAACCCTAAACCCTTATAATTTTATCAATAATGCTCCTCCTTCTAAGCCTGGCCTTGCCTTTGATCTCACAAACAACAACCCTAACAAACCGCTTTTCCCTAATCAACCGTCAGGATTTTCTTGGATGTCAAACAGATCAGTACTCAACAGTTTTCTCAGCCCTAGAGATCGAGGGATTGATAATGAGAGAGGTGAAGAAGAAGAAGAAGAAGAATGTGTCAGCTGA	1431	0.3892	MRREKVAEIMGIDLSLKINDAKPKEKEEEEEEEEEREEERERRILFDEKGKEKKDNKEEEAAEQITEGEIEDDDDASVEEDESLASTKVRIVISKFFSVLCISSTLQSTIIKLALWTNFITYDAYSELRELKMEMDCLKEENKVLRIVVEQTMKDYYHLQIKFADIHPPLNNIINKKDPQISLSLQGNNNNNIGNTSTSSEEGPLPPPTRIPLSSNANIKDSISENDLGLSLRLHTSAEDHHHQDRGNIIINNHEQELLASSSSSLQNNKLIDNGIHHHHHLPAVTASPPNRKTRVCVRARCDTATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCIEDMSILITTYEGTHNHRLPVGATAMASTACTAASFMFLDSSSQPSASSSTAFRTLNPYNFINNAPPSKPGLAFDLTNNNPNKPLFPNQPSGFSWMSNRSVLNSFLSPRDRGIDNERGEEEEEEECVS	476

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele35g1180	476	Coils	Coil	21	48	-	-
	Lele35g1180	476	MobiDBLite	consensus disorder prediction	17	81	-	-
	Lele35g1180	476	MobiDBLite	consensus disorder prediction	38	63	-	-
	Lele35g1180	476	SUPERFAMILY	WRKY DNA-binding domain	300	368	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele35g1180	476	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	127	438	IPR044810	GO:0003700
	Lele35g1180	476	MobiDBLite	consensus disorder prediction	64	80	-	-
	Lele35g1180	476	FunFam	probable WRKY transcription factor 31	292	369	-	-
	Lele35g1180	476	Gene3D	WRKY domain	292	369	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele35g1180	476	MobiDBLite	consensus disorder prediction	184	216	-	-
	Lele35g1180	476	MobiDBLite	consensus disorder prediction	184	204	-	-
	Lele35g1180	476	Coils	Coil	128	148	-	-
	Lele35g1180	476	Pfam	WRKY DNA -binding domain	308	366	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele35g1180	476	MobiDBLite	consensus disorder prediction	454	476	-	-
	Lele35g1180	476	ProSiteProfiles	WRKY domain profile.	302	368	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele35g1180	476	SMART	WRKY_cls	307	367	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele35g1180	Lele-ChrLele35	18081323	18084202	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele35g1180	130	394	WRKY Transcription Factor Family	AT1G68150	50.929	2.12e-75	239

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Lele35g1180		WRKY	3.9e-24	CL0274