Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g1165 ATGTCATTCCGAAGCATAGTTCGTGATGTAAGGGGCAGTTTTGGGAGCTTATCTAGGCGGAGTTTTGATGTCAACAGGCTGACTGGCCACCACCGAGGAAAGTCTCACGGATCATTTCAAGATTTGCATGATCAGCCTGTAGTTATTCAAAGTAGCCGCTGGGCGAGCCTACCCCCGGAATTGCTATATGATGTTATTAGAAGGCTGGAAGAGAGTGAGAGCACATGGCCTGCTCGAAAGCATGTTGTTGCATGTGCTGCAGTTTGCCGGTCCTGGAGGAACATGTGCAAGGAAATTGTGAAGGGCCCAGAATTCTGTGGAAAGCTTACTTTCCCTGTGTCCCTGAAGCAGCCTGGACCAAGAGATGGAATGATTCAGTGTTTTATCAAAAGAGATAAATCTAATTTAACATACCACCTATTCCTTTGTCTCAGCCCTGCTTTGTTAGTTGAAAATGGAAAATTTCTCCTATCTGCCAAGAGGACGAGAAGAACAACTTACACAGAGTATGTTATTTCCATGGATGCTGACAACATCTCCAGATCAAGTAGCACGTACATCGGAAAGCTGAGATCAAATTTTCTTGGTACAAAGTTCATAATATATGATACACAGCCACCATATACTTCTGCCCAAATACCGCCTCCAGGGACCGGGAAGACGAGCCGAAGGTTTTATTCCAAAAAGGTCTCACCAAAGGTCCCATCTGGTACCTACAACATAGCTCAGGTGACATATGAGTTAAATGTGCTGGGGACACGTGGCCCAAGGAGGATGCACTGTATTATGCATTCTATTCCGGTCTCTGCGCTCGATATGGATGGCACTGTTCCTGGCCAACCTGAGCTGCTTCCTTGCACCCTTGAGGATTCATTCCGTAGCATTTCCTTCTCGAAGTCTGTAGACCACTCTATCGAGTTCAGTAGCGCTCGATTCTCTGACATTGGGGGGGCATCCTGCAGCAACGATGATGAGGATAGCAAGATGAGACCCTTGATTCTGAAAAACAAACCTCCAAGATGGCACGAACAGCTTCAATGCTGGTGCCTCAACTTCCGTGGACGGGTGACAGTTGCTTCTGTCAAAAACTTCCAGTTGATTGCAGCCACCCAGCCAGCTGCTGGCGCACCCACACCATCTCAGCCAGCCCCACCAGATCATGACAAGATAATCCTGCAGTTTGGCAAAGTTGGGAAAGATATGTTCACCATGGACTATCGATACCCTCTATCCGCTTTCCAGGCTTTCGCAATATGCTTGAGCAGCTTTGACACCAAACTGGCTTGTGAATAG 1293 0.4733 MSFRSIVRDVRGSFGSLSRRSFDVNRLTGHHRGKSHGSFQDLHDQPVVIQSSRWASLPPELLYDVIRRLEESESTWPARKHVVACAAVCRSWRNMCKEIVKGPEFCGKLTFPVSLKQPGPRDGMIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYTSAQIPPPGTGKTSRRFYSKKVSPKVPSGTYNIAQVTYELNVLGTRGPRRMHCIMHSIPVSALDMDGTVPGQPELLPCTLEDSFRSISFSKSVDHSIEFSSARFSDIGGASCSNDDEDSKMRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPAPPDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g1165 430 PANTHER TUBBY-RELATED 28 428 - -
Lele35g1165 430 SUPERFAMILY Tubby C-terminal domain-like 103 430 IPR025659 -
Lele35g1165 430 SUPERFAMILY F-box domain 49 98 IPR036047 GO:0005515
Lele35g1165 430 Gene3D Tubby Protein; Chain A 113 424 IPR025659 -
Lele35g1165 430 FunFam Tubby-like F-box protein 111 430 - -
Lele35g1165 430 ProSitePatterns Tub family signature 2. 415 430 IPR018066 -
Lele35g1165 430 Pfam Tub family 115 425 IPR000007 -
Lele35g1165 430 ProSitePatterns Tub family signature 1. 352 365 IPR018066 -
Lele35g1165 430 FunFam Tubby-like F-box protein 49 102 - -
Lele35g1165 430 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Lele35g1165 430 PRINTS Tubby superfamily signature 408 430 IPR000007 -
Lele35g1165 430 PRINTS Tubby superfamily signature 334 351 IPR000007 -
Lele35g1165 430 PRINTS Tubby superfamily signature 387 406 IPR000007 -
Lele35g1165 430 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Lele35g1165 430 PRINTS Tubby superfamily signature 352 368 IPR000007 -
Lele35g1165 430 PRINTS Tubby superfamily signature 238 265 IPR000007 -
Lele35g1165 430 Pfam F-box domain 54 100 IPR001810 GO:0005515
Lele35g1165 430 Gene3D - 49 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g1165 Lele-ChrLele35 18007661 18010212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g1165 1 430 TUB Transcription Factor Family AT1G76900 69.032 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele35g1165 Tub 4.3e-117 CL0395