Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g1151 ATGAGGTATTTTAAAATGGCTGAAGTGGAAGAGTATCGCTGCTTCGTTGGTGGCCTTTCATGGTCAACATCTGATAGAAAGTTAAAAGATTCATTTGAGAAGTTTGGAAATCTTCTTGAAGCCAGGGTTGCTGTAGACAAGTTCTCAGGTCGCTCTCGTGGTTTTGGATTTGTAACATTTGATGATCATAAAGCTATGGAAGATGCCATTGAGGCTATGAACGGGATGGATTTAGATGGTCGAACTATTACTGTTGATAAGGCAAAACCTCAACAAGGATCAGCTAGAGATGATGGTGATCGGTACAGAGAAAATGGCCGTGATCGTAATTATAGACGAGATTATGGGGGTGGTCGAGGTTCTAATAGTGGTGGGTGCTTCAAGTGTGGCAAACCTGGTCATTTTGCTAGAGAGTGTCCTGAAGAAGAGGGAAGAGGTGGAAGGTATGGTGACAGAGAAAGTAGATATGGCAGCAGTGGTGGTGGAGGTCGCTACGGCCCTGATAGAAATGCTGATCGTTATTCTGGTGGGCGAAATAGGGACACTGATAGGCATGGGGATCATGGAAATGATCGATATAATCGCAGTGATCGTGCTGGACCTTATGAGAGGCGAGGAACAGGAGGCTCTCGTTCTGGATAG 642 0.4517 MRYFKMAEVEEYRCFVGGLSWSTSDRKLKDSFEKFGNLLEARVAVDKFSGRSRGFGFVTFDDHKAMEDAIEAMNGMDLDGRTITVDKAKPQQGSARDDGDRYRENGRDRNYRRDYGGGRGSNSGGCFKCGKPGHFARECPEEEGRGGRYGDRESRYGSSGGGGRYGPDRNADRYSGGRNRDTDRHGDHGNDRYNRSDRAGPYERRGTGGSRSG 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g1151 213 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Lele35g1151 213 ProSiteProfiles Zinc finger CCHC-type profile. 126 141 IPR001878 GO:0003676|GO:0008270
Lele35g1151 213 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 6 208 - -
Lele35g1151 213 SMART c2hcfinal6 125 141 IPR001878 GO:0003676|GO:0008270
Lele35g1151 213 MobiDBLite consensus disorder prediction 171 204 - -
Lele35g1151 213 Pfam Zinc knuckle 125 141 IPR001878 GO:0003676|GO:0008270
Lele35g1151 213 SUPERFAMILY Retrovirus zinc finger-like domains 107 146 IPR036875 GO:0003676|GO:0008270
Lele35g1151 213 MobiDBLite consensus disorder prediction 84 117 - -
Lele35g1151 213 SMART rrm1_1 13 86 IPR000504 GO:0003723
Lele35g1151 213 MobiDBLite consensus disorder prediction 137 213 - -
Lele35g1151 213 Gene3D - 121 184 - -
Lele35g1151 213 MobiDBLite consensus disorder prediction 91 115 - -
Lele35g1151 213 Gene3D - 5 120 IPR012677 -
Lele35g1151 213 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 84 IPR000504 GO:0003723
Lele35g1151 213 MobiDBLite consensus disorder prediction 137 152 - -
Lele35g1151 213 SUPERFAMILY RNA-binding domain, RBD 6 120 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g1151 Lele-ChrLele35 17878907 17880250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g1151 14 89 Eukaryotic Initiation Factors Gene Family AT4G34110 31.579 5.78e-06 44.7