Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g1083 ATGAGGCTCCGTCACCGGAAGGTTCTCGAAGAAATCTGCTACCTTTACTGCAACATGAAAGATTCCTCTCCATGTTTATCCTCTGATTGCAAAGGTTGCAGCATCAAGTGCTACGTCGAGCCGCCGATTGACTACACCCCACCATCTCCTTTGGCCTTCGATGACCGTGGCTATTTCGATGATACCCACAAAATCCACCACAAGATCTCCACCTGGTTGATCGTCGTTATCGCCGTTCTCGCCGCCGCTTTCCTCGCCCTCCTGTGCTTCGCAATCTACCGGAGAATCATCTCCGGCCGTTTCAGGAGAAGGAGCTCGGAGACGGAGGATGATCCACGGGGAGATTTTCTTGATGAGGAAGAGGGTCCTGTGGTGGACCATCCCATATGGTATATTCGAACCCCTGGTCTTCAACAATCGATAATTTCTGCGATTACTGTGTGTAAATATAAGAAAGGGGAAGGTTTGATTGAAGGTACAGAGTGCTCTGTTTGTTTGAGTGAGTTTGAAGAAGATGAGAATCTCAGGCTTTTGCCTAAGTGTAATCACGCTTTTCATCTCCCTTGTATTGATACCTGGCTCCGATCTCACACCAACTGCCCTCTGTGCCGAGCTCCGATCGTTACCAACCCCACCACGGTCATCGCCTCGTCGGAGCCGGGGCCAAATGTTGTTGCTTTGAATGATTCAGAAGAACCCCAGATGGAAACAGTTGAAAATGGAAGTGAAAATAGTGGTGGGGTTGTGGTGGAGAACAGTGATGGTGAATTGGGAAATAGAGATGAGGAAGAAGGAGGAGGAGCAAGAAGAAGAGAAATGGTAGATGAAGAGGAATTGGGGAATTTGCAGCCAAGAAGAAGATCTGTGTCTCTTGATTCTTCAGCTGTAGAGAAGATCAATCGTGCTCTTGCTAGAACTAATAATTCTTCATCATCTTCTTCATCAAAGAGGGTTTCCAAAAGTGGTTCTTCTTCTTTCAGGATGAAGTCTCTTCAGATAACTGCAGGCACTTCAATGAAGAGATCTCGTTCACATTCATGGTACAGTCGAAGTCAGAGGAAGCCAAGTGTTCCTATTAGAAGCTTTTAA 1089 0.4674 MRLRHRKVLEEICYLYCNMKDSSPCLSSDCKGCSIKCYVEPPIDYTPPSPLAFDDRGYFDDTHKIHHKISTWLIVVIAVLAAAFLALLCFAIYRRIISGRFRRRSSETEDDPRGDFLDEEEGPVVDHPIWYIRTPGLQQSIISAITVCKYKKGEGLIEGTECSVCLSEFEEDENLRLLPKCNHAFHLPCIDTWLRSHTNCPLCRAPIVTNPTTVIASSEPGPNVVALNDSEEPQMETVENGSENSGGVVVENSDGELGNRDEEEGGGARRREMVDEEELGNLQPRRRSVSLDSSAVEKINRALARTNNSSSSSSSKRVSKSGSSSFRMKSLQITAGTSMKRSRSHSWYSRSQRKPSVPIRSF 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g1083 362 MobiDBLite consensus disorder prediction 232 362 - -
Lele35g1083 362 CDD RING-H2_PA-TM-RING 161 204 - -
Lele35g1083 362 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 62 223 IPR044675 -
Lele35g1083 362 SMART ring_2 162 203 IPR001841 -
Lele35g1083 362 FunFam RING-H2 finger protein ATL54 137 210 - -
Lele35g1083 362 SUPERFAMILY RING/U-box 156 210 - -
Lele35g1083 362 Pfam Ring finger domain 161 204 IPR001841 -
Lele35g1083 362 MobiDBLite consensus disorder prediction 255 283 - -
Lele35g1083 362 ProSiteProfiles Zinc finger RING-type profile. 162 204 IPR001841 -
Lele35g1083 362 MobiDBLite consensus disorder prediction 286 362 - -
Lele35g1083 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 211 IPR013083 -
Lele35g1083 362 MobiDBLite consensus disorder prediction 233 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g1083 Lele-ChrLele35 17094092 17095180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g1083 69 211 C3H Transcription Factor Family AT1G72220 54.362 2.11e-47 164