Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g1061 ATGACGAGAAAGAAGATAGAGATAAAGAAGATCGATAACATAACAGCGAGGCAAGTGACATTCTCAAAGAGAAGAAGAGGGCTTTTCAAGAAAGCTAAGGAACTTGCTACGCTTTGTGATGCTGAAATTGGTCTCATTGTCTTTTCTTCCACTGGAAAGCTCCATGACTATGCAAGCTCAAGGTCTCTTTCTTCTCTCCAAATAGCTTTCATCTATCTTCATATATATAACCAATGTTAG 240 0.3833 MTRKKIEIKKIDNITARQVTFSKRRRGLFKKAKELATLCDAEIGLIVFSSTGKLHDYASSRSLSSLQIAFIYLHIYNQC 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g1061 79 SUPERFAMILY SRF-like 1 64 IPR036879 GO:0003677|GO:0046983
Lele35g1061 79 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele35g1061 79 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele35g1061 79 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele35g1061 79 CDD MADS_MEF2_like 3 60 IPR033896 GO:0000977|GO:0045944
Lele35g1061 79 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele35g1061 79 Gene3D - 13 72 IPR036879 GO:0003677|GO:0046983
Lele35g1061 79 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele35g1061 79 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele35g1061 79 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 62 - -
Lele35g1061 79 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g1061 Lele-ChrLele35 16911995 16912234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g1061 1 61 MADS-box Gene Family AT4G24540 73.770 6.62e-28 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele35g1061 SRF-TF 6.4e-25 No_clan