Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g1059 ATGGAAATGACAAGACAGAAGATAGAAATAAAGAGGATCGATAACATAACAGCGAGGCAAGTGACGTTTTCAAAGAGAAGAAGAGGACTTTTCAAGAAAGCTCAAGAACTCTCTACTCTCTGTGATGCTGAGATTGCTCTCATTGTCTTCTCTTCTACTGGGAAGCTCTTTGAATATACTAGCTCAAGCGTGCAGCAGGTTATTGAAAGGCGGGGTCCGCTCTCAGGTACTGAAAGATTAGACCATCCTTCTATAGAGTATGAGAGGGACACCATCAGCATGCTCAGTAAGGAAGAAGCCAATAAGGCTCAGGAACTGAGGCAGTTGAAAGGAGAAGAGCTTGAAGGATTGAACGCAATTGAATTACAGAAGCTTGAAGATCAATTAGAAAAAGGTTTTAGACGTGTTGTCAAAGCAAAGGATGAAATAATGTTCAAAGAGATCGATGCACTCAAGAGAAAGAGAATCCAACTGATGGAAGAGAATAAGCGATTAAAACAGGTGAGGAATGTTGCACAAGAACAAGGTCAGTCATCTGAGTCAGCCAATATTGGAAGCATATTTGATCCTCCACATGACGATGAGAGTTCAGACACTTCTCTCAGATTGGGGTGA 615 0.4163 MEMTRQKIEIKRIDNITARQVTFSKRRRGLFKKAQELSTLCDAEIALIVFSSTGKLFEYTSSSVQQVIERRGPLSGTERLDHPSIEYERDTISMLSKEEANKAQELRQLKGEELEGLNAIELQKLEDQLEKGFRRVVKAKDEIMFKEIDALKRKRIQLMEENKRLKQVRNVAQEQGQSSESANIGSIFDPPHDDESSDTSLRLG 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g1059 204 MobiDBLite consensus disorder prediction 167 204 - -
Lele35g1059 204 SMART madsneu2 3 62 IPR002100 GO:0003677|GO:0046983
Lele35g1059 204 Coils Coil 92 115 - -
Lele35g1059 204 Coils Coil 122 142 - -
Lele35g1059 204 SUPERFAMILY SRF-like 4 82 IPR036879 GO:0003677|GO:0046983
Lele35g1059 204 Pfam K-box region 86 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele35g1059 204 Gene3D - 15 79 IPR036879 GO:0003677|GO:0046983
Lele35g1059 204 CDD MADS_MEF2_like 5 76 IPR033896 GO:0000977|GO:0045944
Lele35g1059 204 Coils Coil 148 175 - -
Lele35g1059 204 PANTHER SERUM RESPONSE FACTOR HOMOLOG 5 177 - -
Lele35g1059 204 ProSiteProfiles K-box domain profile. 85 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele35g1059 204 MobiDBLite consensus disorder prediction 169 185 - -
Lele35g1059 204 PRINTS MADS domain signature 25 40 IPR002100 GO:0003677|GO:0046983
Lele35g1059 204 PRINTS MADS domain signature 5 25 IPR002100 GO:0003677|GO:0046983
Lele35g1059 204 PRINTS MADS domain signature 40 61 IPR002100 GO:0003677|GO:0046983
Lele35g1059 204 FunFam Transcription factor, MADS-box 15 84 - -
Lele35g1059 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 59 IPR002100 GO:0003677|GO:0046983
Lele35g1059 204 ProSitePatterns MADS-box domain signature. 5 59 IPR002100 GO:0003677|GO:0046983
Lele35g1059 204 ProSiteProfiles MADS-box domain profile. 3 63 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g1059 Lele-ChrLele35 16874602 16883354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g1059 3 204 MADS-box Gene Family AT2G22540 51.064 2.94e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele35g1059 K-box 2.3e-16 No_clan