Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g1057 ATGACGAGAAGGAAGATAGCAATAAAGAAGATAGAGAACGTAGCTGCGAGGCAAGTGGCTTTCTCAAAGAGAAGAAAGGGTCTATTCAAGAAGGCCATGGAGCTTTCAACTCTCTGTGATGCTGAGATTGCACTCTTCGTTTTCTCAGCTTCTGGTAAACTCTTTGATTATGGTAGTACAAGACAACTCAATGGAGAAGAACTACAAGGATTGTCCGTAAAAGATTTAAGGAAACTAGAAGATTTACTTAACAAAAGCTTGCATCGCGTTTCAAAGGCAAAGGATGAAGTATATGAGCAGGAGATCAATATTCTAAAGAAAAAGGTTACTCTTTCCCTAATTAAATCAAAGCTTCTGAAGGAAGAAGCGCGGTGA 375 0.392 MTRRKIAIKKIENVAARQVAFSKRRKGLFKKAMELSTLCDAEIALFVFSASGKLFDYGSTRQLNGEELQGLSVKDLRKLEDLLNKSLHRVSKAKDEVYEQEINILKKKVTLSLIKSKLLKEEAR 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g1057 124 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele35g1057 124 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele35g1057 124 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele35g1057 124 Gene3D - 13 73 IPR036879 GO:0003677|GO:0046983
Lele35g1057 124 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele35g1057 124 Pfam K-box region 59 121 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele35g1057 124 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 95 - -
Lele35g1057 124 Coils Coil 76 96 - -
Lele35g1057 124 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele35g1057 124 SUPERFAMILY SRF-like 2 61 IPR036879 GO:0003677|GO:0046983
Lele35g1057 124 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g1057 Lele-ChrLele35 16779185 16787806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g1057 1 108 MADS-box Gene Family AT4G24540 39.103 1.67e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele35g1057 K-box 6.4e-11 No_clan