Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g1053 ATGAATGGTAGTTTAGCTGGAATGGTAAGGAGACCTTTAACGCTGCTTCCTCTGTCTCGCTGCCGGGGTTTAGCTTCTTCCACGGTTTGTTGTGCCCTGTTGCTTTGTCTGAATATTGTCACAGCTTTTGTTAAAGAAGACCAAACTTTCGAAGAGTTAGGACTGGATGCACGCCTAATTCGTGGCTTACTCAAAAGGGGAGTTGAGAAACCAACTCCAATTCAACAGGTGGCTATTCCACTGATATTGGTATATGCAGAGGTTTCATCTCTCATAGAATTATGCAGAGTTCAATTGAAACCTGTGCAATTGACAAGCAATATGAAGGCTTCTGATCTGCGAACAGCAATGACTGGACCACCTGATGTTTTGATTTCCACACCTGCTTGTATTGCTAAATGCTTGTCCGCTGGCATACTTAAATCAACATCCTTTAATGGTTCCCTTGAAACTCTAGTTCTCGATGAGGCAGATCTTCTATTGTCATACGGCTATGAAAATGATATAAAAGCCTTTTCAGCTCATGTACCCAGAAGTTGCCAATGTCTTCTTATGTCCGCAACATCAAGTGCTGATGTTGACAAACTAAAGAAGTTGATTCTGCACAACCCCTTTGTTTTGACTTTGCCTGAACTAGGAAATCAGAAGGATGAGATTATCCCTAAAATCGTTCAACAGTTTTGGATGTCATGCCATGCCAGTGATAAGTTACTTTACACCCTTGCCTTGTTGAAGTTAGAGTTGGTCCAAAAGAAAGTTCTAATATTTACCAATACCATAGACATGAGTTTCAGATTGAAACTGTTCTTGGAAAAGTTTGGAATCAAGTCTGCTGTTTTAAATGCTGAGTTGCCACAGAATTCCCGCCTCCATATTCTTGAGGAATTCAATGCTGGCCTCTTTGATTATCTTATTGCAACTGATGACAGCCCCACAAAGGAGAAGTATGAAGCAACGAAAGAAAATAATGGAGAGTTGCGGCGGTCCAAAAAACATGTCAAGCAAAAATTAGATTCTGAATTTGGAGTTGTGAGGGGAATCGACTTTAAAAATGTATACACGGTTATAAACTTTGAAATGCCTCCAAGTGTTGCAGGATATGTCCATCGAATAGGACGTACCGGAAGAGCATACAATTCTGGTTCTTCTGTATCTTTGGTTTCTACTGATGAGATGGAAACTTTAGATGAAATAAGATCTTTTGTTGGGGATGATGAAAACAATGGTTCAAACACAATTGCTGAATTTCCATTGCTCACCAAGAATGCTGTGGAATCTTTACGGTATCGGGCTGAGGATGTTGCAAAGAGCATTACAAAAATAGCGGTTCGTGAATCACGAGCCAAGGATTTGAGGAATGAAATTCTAAACTCTGAAAAGTTGAAGGCACACTTTGAATCTAATCCGAGGGACCTAGATCTATTGAAGCATGACAAAGTTTTGAGCAAAAATGCCCCTCCAGCACACCTACGTGATGTGCCGGACTATTTAGTAGATAAAACAACCAAAGAGGCAAGGGAAATGGTCAAGCTTGCAAGGGATGCAATGGGAAATAATAATCGCTCACGAGGATCGAAAAGGAAAAAGTCCAGAAAAGGTGGAGACCCTCTCAAGGCTATATCCAAGATTTTGATGAAATTTGGACCTAGGTGTCTAAAAGACCACACAAAGGGGATGGACATAAACGCAGGAAGAAAAACGAAGTTTGATCGATATGGTTTTCTTGGACAAAGCGGAGTCATCCCGGTTGAGGTTGAGAGGATAAACAGTTTTGTTCACTCCAAATGA 1788 0.4077 MNGSLAGMVRRPLTLLPLSRCRGLASSTVCCALLLCLNIVTAFVKEDQTFEELGLDARLIRGLLKRGVEKPTPIQQVAIPLILVYAEVSSLIELCRVQLKPVQLTSNMKASDLRTAMTGPPDVLISTPACIAKCLSAGILKSTSFNGSLETLVLDEADLLLSYGYENDIKAFSAHVPRSCQCLLMSATSSADVDKLKKLILHNPFVLTLPELGNQKDEIIPKIVQQFWMSCHASDKLLYTLALLKLELVQKKVLIFTNTIDMSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDDSPTKEKYEATKENNGELRRSKKHVKQKLDSEFGVVRGIDFKNVYTVINFEMPPSVAGYVHRIGRTGRAYNSGSSVSLVSTDEMETLDEIRSFVGDDENNGSNTIAEFPLLTKNAVESLRYRAEDVAKSITKIAVRESRAKDLRNEILNSEKLKAHFESNPRDLDLLKHDKVLSKNAPPAHLRDVPDYLVDKTTKEAREMVKLARDAMGNNNRSRGSKRKKSRKGGDPLKAISKILMKFGPRCLKDHTKGMDINAGRKTKFDRYGFLGQSGVIPVEVERINSFVHSK 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g1053 595 Coils Coil 448 468 - -
Lele35g1053 595 Pfam Helicase conserved C-terminal domain 235 378 IPR001650 -
Lele35g1053 595 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 88 207 IPR014001 -
Lele35g1053 595 Pfam DEAD/DEAH box helicase 88 196 IPR011545 GO:0003676|GO:0005524
Lele35g1053 595 PANTHER RNA HELICASE 45 83 - -
Lele35g1053 595 Gene3D - 40 87 IPR027417 -
Lele35g1053 595 CDD SF2_C_DEAD 224 387 - -
Lele35g1053 595 SMART helicmild6 264 378 IPR001650 -
Lele35g1053 595 SMART ultradead3 67 218 IPR014001 -
Lele35g1053 595 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 48 76 IPR014014 GO:0003724
Lele35g1053 595 MobiDBLite consensus disorder prediction 513 535 - -
Lele35g1053 595 Gene3D - 219 485 IPR027417 -
Lele35g1053 595 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 242 424 IPR001650 -
Lele35g1053 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 390 IPR027417 -
Lele35g1053 595 Gene3D - 88 213 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g1053 Lele-ChrLele35 16731561 16739076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g1053 49 418 Eukaryotic Initiation Factors Gene Family AT3G19760 23.022 1.12e-22 99.0