Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele35g1038 | ATGAATCCACAGCCACGGCAAGCACGGCCTTTCGAGGGCGGAGAACTACAACTGGTGCAGGTTCCCATGCAGGTGGATGGTGTCGAAGATGGATTGATTGCTCATTGTATCAATGGACGTCGTGACGAGGTCAGTGATGGGGTCGAAGAAGCTCGAGTGAGTTCTGGGTTATCGGGGGCAAATGGTTGTGCTTTCAAGTCTCGAACCAGTGAACTCACTATTTCGTTTGAAGGCGAGGTTTATGTTTTCCCAGCTGTTACGCCAGAAAAGGTACAGGCTGTATTGTTATTGTTGGGAGGGTGTGAGATGCCCAGCCCCTGTAGTGCTCCCAGCACTGATCTTTTGCTGCAGCAGAACTATCAGAATGGAATTAATGATACTTCCCGGGGTTCAAAACTTTCACGAAGATTTGCATCCCTTGTTAGGTTTCGTGAAAAGCGAAAAGAGAGATGTTTTGAGAAAAAGATTCGGTACAGCTGCCGTAAAGAAGTTGCACAGAGGATGCATCGTAAGAATGGACAGTTTGCATCATCAAAGGAATGTGACAGTTCTGCTGCTGAAAACTGGGACTCTAGCAATGGCGCTGCTTGTTCAGAATCTAATGAACGTAAATGCCAGCATTGTGGAATTAATGAAAAGTCTACTCCAGCAATGCGGCGAGGACCAGCTGGTCCAAGATCTCTCTGCAATGCTTGTGGGTTAATGTGGGCAAATAAGGGGACACTGAGAGTTCTCAGCAAAACAGGAAAGGTTACTTCTTTGGAACAAAATGAACTGGATACGTCAGCTGAGAGGAAGCCCTTGACGACTAAACCAGAAAACTCTTGTCCTAAGAAGAACGAGGAAGCATGTTTTAAGGGAAGCCCCAAGGAGACAAAGCCTGAGCTGCTGGAATCCAGAAAGTCACCCAAGAGGGTGAACGAGCAGTATACACTTGAAACTGCTGAAGCAATTACTGACAATTTATCCATCCAAGTGGAGAACCTTGATGTTAATCTGCATGAGCAGGATACTCTTGAAGATCTTGCTGATGCATCTGGAACAGATTTTGAGATTCCTACAGGTTTTGATGAGCAGATTGACATTGATGATTCCCACTTGAAGACGTACTGGTTATGA | 1119 | 0.4584 | MNPQPRQARPFEGGELQLVQVPMQVDGVEDGLIAHCINGRRDEVSDGVEEARVSSGLSGANGCAFKSRTSELTISFEGEVYVFPAVTPEKVQAVLLLLGGCEMPSPCSAPSTDLLLQQNYQNGINDTSRGSKLSRRFASLVRFREKRKERCFEKKIRYSCRKEVAQRMHRKNGQFASSKECDSSAAENWDSSNGAACSESNERKCQHCGINEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRVLSKTGKVTSLEQNELDTSAERKPLTTKPENSCPKKNEEACFKGSPKETKPELLESRKSPKRVNEQYTLETAEAITDNLSIQVENLDVNLHEQDTLEDLADASGTDFEIPTGFDEQIDIDDSHLKTYWL | 372 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele35g1038 | 372 | Pfam | tify domain | 68 | 99 | IPR010399 | - | |
| Lele35g1038 | 372 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 43 | 351 | IPR045280 | GO:0006355 | |
| Lele35g1038 | 372 | MobiDBLite | consensus disorder prediction | 254 | 303 | - | - | |
| Lele35g1038 | 372 | ProSiteProfiles | Tify domain profile. | 65 | 100 | IPR010399 | - | |
| Lele35g1038 | 372 | SMART | tify_2 | 65 | 100 | IPR010399 | - | |
| Lele35g1038 | 372 | Gene3D | - | 196 | 258 | IPR013088 | GO:0006355|GO:0008270 | |
| Lele35g1038 | 372 | Pfam | GATA zinc finger | 205 | 241 | IPR000679 | GO:0006355|GO:0043565 | |
| Lele35g1038 | 372 | SMART | GATA_3 | 199 | 252 | IPR000679 | GO:0006355|GO:0043565 | |
| Lele35g1038 | 372 | Pfam | CCT motif | 136 | 178 | IPR010402 | GO:0005515 | |
| Lele35g1038 | 372 | CDD | ZnF_GATA | 204 | 247 | IPR000679 | GO:0006355|GO:0043565 | |
| Lele35g1038 | 372 | ProSiteProfiles | CCT domain profile. | 136 | 178 | IPR010402 | GO:0005515 | |
| Lele35g1038 | 372 | MobiDBLite | consensus disorder prediction | 259 | 303 | - | - | |
| Lele35g1038 | 372 | ProSitePatterns | GATA-type zinc finger domain. | 205 | 232 | IPR000679 | GO:0006355|GO:0043565 | |
| Lele35g1038 | 372 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 201 | 252 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele35g1038 | Lele-ChrLele35 | 16401234 | 16406931 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele35g1038 | 71 | 258 | Tify Gene Family | AT1G51600 | 54.271 | 7.76e-62 | 199 |
Transcription factors information