Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g1007 ATGGGCAGAGGGAAGATTGTGATTAAGAGGATTGACGATTCAACAAGCAGGCAAGTGACTTTCTCAAAGAGAAGAAATGGATTGCTCAAGAAAGCAAGGGAGCTTTCGATCCTCTGTGACGCCCAAGTTGGCGTTGTTGTGTTCTCCAGCACCGGCAAGCTCTACGAGTATGGAAGCTGCAGCATGAAATCTATCATTGAGCGTTACAACAAAGTAAAAGTGGAACACCATCAGCATATGAATCCTGATTCGGAAGTCAAGTTTTGGCAGAGAGAAGTGATAGTATTGAGGCAACAACTTCAACATATGCAAGAATGCCACAGGCAATTGATGGGTGCACAACTTTCTGGTTTGGGCATTGACGAACTGCAAAATCTGGAAAATCAACTGGAGATGAGTTTAAAGGATGTTCGAATTAAAAAGAATCAAATTTTAACTGATGAGATTCAACATCTGCAACAAAAGGGAAATCAAATCCATCAAGAAAATGTACAACTCTATAAAAGGATAAACCTCATTGCTAAAGAAAATGTAGAACTACAGAAGATTCATGAAGCAAGGATTATGAATGAAGAAAATGGGAATTCCAATCCTCCATACAATATCAACAACAAATATGGTTTACAAGCTCCAAACCAGCTGCAGCCGAACCAGCCACGACCTCAATATGCTGAATCACGAGCAAAAGCTATGGAACTGAGGCACTAG 708 0.4054 MGRGKIVIKRIDDSTSRQVTFSKRRNGLLKKARELSILCDAQVGVVVFSSTGKLYEYGSCSMKSIIERYNKVKVEHHQHMNPDSEVKFWQREVIVLRQQLQHMQECHRQLMGAQLSGLGIDELQNLENQLEMSLKDVRIKKNQILTDEIQHLQQKGNQIHQENVQLYKRINLIAKENVELQKIHEARIMNEENGNSNPPYNINNKYGLQAPNQLQPNQPRPQYAESRAKAMELRH 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g1007 235 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele35g1007 235 Coils Coil 120 143 - -
Lele35g1007 235 MobiDBLite consensus disorder prediction 190 222 - -
Lele35g1007 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele35g1007 235 MobiDBLite consensus disorder prediction 189 235 - -
Lele35g1007 235 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Lele35g1007 235 ProSiteProfiles K-box domain profile. 86 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele35g1007 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele35g1007 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele35g1007 235 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele35g1007 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele35g1007 235 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lele35g1007 235 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Lele35g1007 235 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele35g1007 235 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele35g1007 235 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Lele35g1007 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g1007 Lele-ChrLele35 16011006 16016383 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g1007 1 221 MADS-box Gene Family AT2G14210 59.910 1.66e-80 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele35g1007 K-box 3.5e-25 No_clan