Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g0931 ATGGCTGCTCCTAGTCCTACGCACCTCCCTGACCACTTCAAGTGTCCGATTTCGCTCGAGATAATGTCCGACCCGGTTATCCTCTCCTCTGGTCACACCTTCGATCGGTCTTCAATCCAACGGTGGCTCGACGCCGGCCACCGGACTTGCCCAATTACGAAATTACCTCTCCCTGATTTTCCTTCCCTCATACCCAATCACGCTCTCAGAAGCTTGATTTCAAACTATTACCATATCTCAAAATTCAAGCACCGGCCTCCTTCTCAACAGGAACCCCTAATTTCCGCTATTACCTCTCGCTCGTCGTCATTGGAGAGCAAAATTGAATCGCTTGACCAACTTACGCTCCTTTCCAAGCGTGACTCGGTTTTCCGTCGGCGGTTGACGGAGTCAGGAGTGGTTTCGGCGGTACTGAACTGCGTTGACTTGGGTGAGCCTAGTCTACAGGAGAAAGCACTGTCGTTGTTGCTCAATCTTAGTCTCGATGACGATAACAAGGTGGGTTTGGTGGCGGAGGGTGCCATAGGGAAGGTTGTGGCTGTTCTGTTAGGTGGCTCACCGGATTGCCGAGCAGTGGCGGCAACCATGTTTACGAGTTTGGCGGTTGTGGAGGTGAACAAAGCCACAATTGGTGCGTATCCATATGCTATAGGAGCTCTTGCTTCTCTTCTTCGAGATGGTGAAGGCAGGGAGAAGAAAGAAGCGGCCACAGCGCTCTATGCTATATGTTCTTTTCCGGATAATCGGAGGAGAGCCGTAGAATGTGGGGCAGTCCCCATTTTGCTAAGAAGTGTTGATTCTGGGCTTGAAAGGGCTGTTGAAGTTCTTGGTGTGCTTGCTAAGTGTAGGGAAGGTAGAGAACAAATGGAAAGGTATAATGGATGCATACAGATTTTAGTACGGGTGTTGAGGAATGGAAGCTCGAGGGGAATTCAATATGCCCTGTTAGCACTGAATTCCGTTTGCTGTAACAGTGAAAAAATGGTTCGGGAGGCGACTAAAGAAGGAGTTTTGGATATTTGTCTGGGATTTCTGGAGGATGATAATGAAAAAATAAGGAGAAATTCATCCAGTTTGATTAAGGTTCTGCGTGGCAACCATCGGATTAGTTGA 1113 0.4861 MAAPSPTHLPDHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITKLPLPDFPSLIPNHALRSLISNYYHISKFKHRPPSQQEPLISAITSRSSSLESKIESLDQLTLLSKRDSVFRRRLTESGVVSAVLNCVDLGEPSLQEKALSLLLNLSLDDDNKVGLVAEGAIGKVVAVLLGGSPDCRAVAATMFTSLAVVEVNKATIGAYPYAIGALASLLRDGEGREKKEAATALYAICSFPDNRRRAVECGAVPILLRSVDSGLERAVEVLGVLAKCREGREQMERYNGCIQILVRVLRNGSSRGIQYALLALNSVCCNSEKMVREATKEGVLDICLGFLEDDNEKIRRNSSSLIKVLRGNHRIS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g0931 370 CDD RING-Ubox_PUB 13 54 IPR045210 -
Lele35g0931 370 Pfam U-box domain 10 77 IPR003613 GO:0004842|GO:0016567
Lele35g0931 370 SUPERFAMILY RING/U-box 7 78 - -
Lele35g0931 370 PANTHER U BOX DOMAIN-CONTAINING 9 338 - -
Lele35g0931 370 SMART Ubox_2 12 76 IPR003613 GO:0004842|GO:0016567
Lele35g0931 370 SUPERFAMILY ARM repeat 92 363 IPR016024 -
Lele35g0931 370 FunFam RING-type E3 ubiquitin transferase 8 80 - -
Lele35g0931 370 ProSiteProfiles U-box domain profile. 8 83 IPR003613 GO:0004842|GO:0016567
Lele35g0931 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 84 IPR013083 -
Lele35g0931 370 SMART arm_5 282 323 IPR000225 GO:0005515
Lele35g0931 370 SMART arm_5 162 202 IPR000225 GO:0005515
Lele35g0931 370 SMART arm_5 121 161 IPR000225 GO:0005515
Lele35g0931 370 SMART arm_5 245 281 IPR000225 GO:0005515
Lele35g0931 370 Gene3D - 85 268 IPR011989 -
Lele35g0931 370 Gene3D - 269 363 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g0931 Lele-ChrLele35 14468748 14469860 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g0931 9 365 U-box Gene Family AT4G21350 63.836 2.79e-159 450