Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g0873 ATGCTGGTGGAGGAGGATGTTTTGCCGGACCATCTGCGCTGTAGCCGAACCGATGGTCGACAATGGCGGTGCCGCCGGAGAGTTATGGATAATCTGAAGCTATGTGAGATTCACTATTTACAAGGTCGTCATCGGCAATACAAGGAGAAGGTCCCGGAGTCGCTGAAGCTTCAGAGGAAGCGAAAGAATGGGAATAATGACAGCAACAACGACTATGTTGTTCTCGACAATGTTGAAATTAGGGCACTGGAAGTAGCGAAGAAAGCGAGCCTGATAAAGAAGAGGCGTAAATTCTCGGATTCTTCTGAAGCAGTGGATGTTCATCCTGTGAAGAAAAAGGCCTTGAAACAAGGCGGTATGCAGTTGGAGTTGATAAGGATAGTCCTGAAGAGGGAGATTGAGAAGATGAAGAAGAAGAAGAAGCAGGGAGAGAACGAGAAGAAGAGGCAGAAAGAAGAAGAAGAAGAAGAGCAGATTCATTACAGCGAGGGAGAGTTGACCAGAGAATTACCCAATGGTGTTATGGCAATCTCTTCAGCATCAACGCCCCAATATTACAACAATGTGGGTTTACAATGTGATGTTAAAGTAGGGATTGATCATAAAGCAATTACCCCCCGTTACTTCAGGTCCAAGAATGTGGAGAAGCTTCCTGCTGGCAAGTTGCCGGTATTGCCTTTTGGGCGAAGCTTGAAGTGTAGGAGGAAAAAGTGTCACTGGTGCCAGAAAAGCGATTCTTGGAATCTCATTCAATGTTCAAGTTGTCAAAAACAATTCTTTTGCATGGATTGCATCAAAGAACGGTACTTTGAAACTCAAAATGAAGTTAAGACAGCATGTCCAGTTTGTCGAGGAACATGTTCCTGTAAGGACTGCTTGGCAAGTCAGTGTAAAGACAGTGAAAGTAAGGAATATTTGGCTTGTAAAAGCAGAGTTGACAGAATTTTGTGTTTCCACTATATGATCTGCATGCTTCTTCCTGTATTAAAACAAATCATTGAAGACCATAATATTGAACTAGAAACAGAAGTGAAAAAGAAAAGAACCTCTGATATTCAAATCAAGCAGGCTGAGTTTTGCTGTAATGAACAAAATTGCTGGATACCCAATAAATTGAAAGATGGCATTTCCGGTGAAAACCAGCTTTTGGATGAGGTTATTTCCAATGGCAATTCGACCGCTACTTCATCACCAGATTGCTCAATTTGTAATGGTTCTGGAAATGTATCTTGTCCCTCCACAGAGCTTGGTGGTTGTGGTGATAGCCTCCTTGATTTTGGATGTGTTTTTCCCGTAAGTTTGATAAAAGAAATGGAAACAAAAGCTGAAGAATTATCTTGCTGCTACGACTTTCCTGAATCATTGGATAAAAGTTTGAGTTGCTCGCTTTGTCTCAATTCTGATAATAAGATTGATAGATACAAACAGTGGCAAGAAGCAGCTCTAAGAGAAGATTCCGATGATAATTGCTTGTTTTATCCCAGAGTTTTGGACATCAGTCGTGATAATTTTGAACACTTTCAGAAGCACTGGAGAAAAGGCCATCCAGTTGTGGTGCGAGATGTTCTCCTAAGTAAATCAAATCACAGCTGGGATCCGCTGGTCATGTTCTGTGCTTATCTTGAGCAGAGTATCTCAAGATATCAGAATGATAAGGACTTGCTTGAAGCTTGTTTGGATTGGTGTGAGGTAGAAATTAACATTAGGCAGTATTTTTCTGGGTCTCTAAGATTTCAACCACAGAAAAATACTTGGCATGAGATGCTGAAATTGAAGGGTTGGCTGTCTTCCCAACTATTCAAAGAACAGTTTCCGACTCATTTTGCACAAGTGATTGCTGCTCTACCACTTCAAGAATACATGAATCCCATGTCTGGTATTCTGAATTTAGCAGCAAATTTGCCACAAGGGAGTGCAAAACATGACATAGGGCCGTTTGTCTATATGTCATATGGCAGTGCTGATGAACAAGTTGATTCTGTAACAAAACTCTGTTACAACTCATGTGATGTGGTTAATATCATGGCGCATTCAACAGATGTCCCTCTCTCTACAGAACAACTTAATAAAATAAGAAAGTTATTGAAAAAGCACCAAAATCTGTGTCAAAGGGAGTCTTCCAAAATTATTACTGAGCAGATATTGGGAGAGAGTTTGGAAGAAAATTCATTATTGCATGCTGAAGACAAGGAACAAAATGGGGTGCAGAGTACGGTTAGAGAAGAAATGAATTTCTTCCGGAGAGTCAACAGAACAACATTCATCTCTACAGAGGCAGGAAATGCAGCTGGTCAGAGTACGAACAGCAATATTTCTCAGGGTGGAGAATGTGATTCAGATTCAGATTCAGATTCAGATTATGATTTTGAATCCACTGTACTTCATGGGTCAGCCAAGAACACTCCATTGTCCATGCTTGATAATCCCAGATGTTCCTGTGATAGCTCAAAGAACGATAGAAATAAAAGCCTTTCTGATCATTCTGGTGCCCAGTGGGATGTATTTCGCAGACAAGATGTTCCAAAACTAATGGAATACCTTAAAAGACATTGTACTGAATTTGCTGATACCCAGAACTACAAAAAGAAGATGATTAACCCAATTCTAGATCAGATCTTCTTTCTTGACAATACTCACAAAATGAGGCTTAAGGAGGAGTTTGAAATTGAACCGTGGACTTTTGAGCAACATGTTGGAGAAGCTGTCACCATTCCTGCTGGATGTCCATACCAGATCAGGAATCCAAAGTGTTGTGTTCATGTGATACTTGAATTTGTGTCCCCTGAAAATGTTACTGAGTGCATTGAGTTGATTGACGATGTCTGTCTACCTCCCGAAGGACATAAAGCAAAAGTGGATAAGCTGGAGATGAAGAAAATGGCCCTTCATAGCATGAGAACAGCGATAAAAGAAATAGGAGATCTTACATGTAAAAAGTGA 2940 0.4065 MLVEEDVLPDHLRCSRTDGRQWRCRRRVMDNLKLCEIHYLQGRHRQYKEKVPESLKLQRKRKNGNNDSNNDYVVLDNVEIRALEVAKKASLIKKRRKFSDSSEAVDVHPVKKKALKQGGMQLELIRIVLKREIEKMKKKKKQGENEKKRQKEEEEEEQIHYSEGELTRELPNGVMAISSASTPQYYNNVGLQCDVKVGIDHKAITPRYFRSKNVEKLPAGKLPVLPFGRSLKCRRKKCHWCQKSDSWNLIQCSSCQKQFFCMDCIKERYFETQNEVKTACPVCRGTCSCKDCLASQCKDSESKEYLACKSRVDRILCFHYMICMLLPVLKQIIEDHNIELETEVKKKRTSDIQIKQAEFCCNEQNCWIPNKLKDGISGENQLLDEVISNGNSTATSSPDCSICNGSGNVSCPSTELGGCGDSLLDFGCVFPVSLIKEMETKAEELSCCYDFPESLDKSLSCSLCLNSDNKIDRYKQWQEAALREDSDDNCLFYPRVLDISRDNFEHFQKHWRKGHPVVVRDVLLSKSNHSWDPLVMFCAYLEQSISRYQNDKDLLEACLDWCEVEINIRQYFSGSLRFQPQKNTWHEMLKLKGWLSSQLFKEQFPTHFAQVIAALPLQEYMNPMSGILNLAANLPQGSAKHDIGPFVYMSYGSADEQVDSVTKLCYNSCDVVNIMAHSTDVPLSTEQLNKIRKLLKKHQNLCQRESSKIITEQILGESLEENSLLHAEDKEQNGVQSTVREEMNFFRRVNRTTFISTEAGNAAGQSTNSNISQGGECDSDSDSDSDYDFESTVLHGSAKNTPLSMLDNPRCSCDSSKNDRNKSLSDHSGAQWDVFRRQDVPKLMEYLKRHCTEFADTQNYKKKMINPILDQIFFLDNTHKMRLKEEFEIEPWTFEQHVGEAVTIPAGCPYQIRNPKCCVHVILEFVSPENVTECIELIDDVCLPPEGHKAKVDKLEMKKMALHSMRTAIKEIGDLTCKK 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g0873 979 ProSiteProfiles Zinc finger RING-type profile. 238 284 IPR001841 -
Lele35g0873 979 ProSiteProfiles WRC domain profile. 8 54 IPR014977 -
Lele35g0873 979 MobiDBLite consensus disorder prediction 757 778 - -
Lele35g0873 979 MobiDBLite consensus disorder prediction 136 162 - -
Lele35g0873 979 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 391 978 IPR045109 GO:0032454|GO:0033169
Lele35g0873 979 Coils Coil 126 158 - -
Lele35g0873 979 Gene3D Cupin 495 951 - -
Lele35g0873 979 Pfam WRC 9 50 IPR014977 -
Lele35g0873 979 MobiDBLite consensus disorder prediction 794 812 - -
Lele35g0873 979 MobiDBLite consensus disorder prediction 757 826 - -
Lele35g0873 979 ProSiteProfiles JmjC domain profile. 623 942 IPR003347 -
Lele35g0873 979 SMART cupin_9 604 942 IPR003347 -
Lele35g0873 979 SUPERFAMILY Clavaminate synthase-like 493 967 - -
Lele35g0873 979 Pfam JmjC domain, hydroxylase 819 922 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g0873 Lele-ChrLele35 8009242 8014428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g0873 13 71 GRF Transcription Factor Family AT5G53660 42.373 9.61e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lele35g0873 JmjC 2.8e-09 CL0029