LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele35g0858	ATGTCTACCACTTCTGGTCGCGTCATCAAGTGCAAAGCTGCGATTGCATGGGAAGCAGAGAAGCCTCTGGTGATTGAAGAAATAGAAGTAGCGCCACCACAGGCTGGAGAAGTGCGTCTGAAAATCCTCTTTACGTCCCTTTGTCATAGTGATGTTTACTTCTGGGAAGCCAAGGGTCAAACTCCACTGTTCCCTCGTATACTTGGTCACGAAGCAGCAGGGATAGTGGAGAGTGTAGGGGAAGGAGTGAAGCATCTGAAAGAGGGAGACCATGTTTTGCCAGTATTCACAGGGGAGTGTGGAGAATGCAAGCATTGTAAGTCAGAAGAGAGCAACTTGTGCGAGATTCTCATGGTGGATCCTGATAGAGGTTTTATGATCAACGGCGGAAACAGCAGGTTCTCTAAGAATGGACGGCCCATATATCACTTTCTTGGCACTTCCACATTCAGTGAATACACAGTGGTCCATGCTGGTTGTGTTGCCAACATCAATCCTTCTGCTCCTCTTCACAAAGTTTGTCTCCTTAGTTGCGGATTCTGCACAGGTTTCGGTGCTACTGTAAATGTAGCAAAACCAAAACCTGGTTCCACTGTTGCCATCTTTGGGCTCGGAGCTGTCGGCCTAGCTGCTGCTGAAGGTGCAAGGGTTTCTGGTGCCTCTAGAATCATTGGGGTTGACTTAAATTCTAGCCGTTTTGAGCAAGCCAAAAAGTTTGGGGTTAATGAATTTGTGAACCCAAAAGATCATGACAGGGCTGTGCATGAGGTGATAGCTGAGATGACCGATGGTGGGGTCGATTGTGCCGTTGAATGCACCGGGAGCGTCCAAGCCATGATGTCGGCATTTGAATGTGTCCATCACGGTTGGGGTGTTGCTGTACTCGTTGGTCTGCCAAATAAGGGTGATGAATTCAAAACTCATCCCCTCAACTTCTTGAAGGAGAGAACTCTGAAGGGTACTTTCTATGGCAACTTCAAGCCTAGATCTGATCTTCCTTCTCTTGTGGAGAAATGCATGAAAGGGGAGTTGGAATTGGACAAGTTCATCACTCATTCTGTGCCATTCTCGGAGATTAACAAAGCCTTTGAGTACATGTTGAAGGGAGAGTCCATCAGGTGCATCATTCGTATGCAAGATTAA	1143	0.4716	MSTTSGRVIKCKAAIAWEAEKPLVIEEIEVAPPQAGEVRLKILFTSLCHSDVYFWEAKGQTPLFPRILGHEAAGIVESVGEGVKHLKEGDHVLPVFTGECGECKHCKSEESNLCEILMVDPDRGFMINGGNSRFSKNGRPIYHFLGTSTFSEYTVVHAGCVANINPSAPLHKVCLLSCGFCTGFGATVNVAKPKPGSTVAIFGLGAVGLAAAEGARVSGASRIIGVDLNSSRFEQAKKFGVNEFVNPKDHDRAVHEVIAEMTDGGVDCAVECTGSVQAMMSAFECVHHGWGVAVLVGLPNKGDEFKTHPLNFLKERTLKGTFYGNFKPRSDLPSLVEKCMKGELELDKFITHSVPFSEINKAFEYMLKGESIRCIIRMQD	380

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele35g0858	380	SUPERFAMILY	GroES-like	328	377	IPR011032	-
	Lele35g0858	380	FunFam	Alcohol dehydrogenase class-P	183	321	-	-
	Lele35g0858	380	Gene3D	-	20	370	-	-
	Lele35g0858	380	SUPERFAMILY	GroES-like	4	186	IPR011032	-
	Lele35g0858	380	Gene3D	-	183	321	-	-
	Lele35g0858	380	ProSitePatterns	Zinc-containing alcohol dehydrogenases signature.	69	83	IPR002328	GO:0008270\|GO:0016491
	Lele35g0858	380	Pfam	Alcohol dehydrogenase GroES-like domain	36	161	IPR013154	-
	Lele35g0858	380	FunFam	Alcohol dehydrogenase 6	14	194	-	-
	Lele35g0858	380	PANTHER	ALCOHOL DEHYDROGENASE	7	376	-	-
	Lele35g0858	380	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	169	343	IPR036291	-
	Lele35g0858	380	CDD	alcohol_DH_plants	9	377	-	-
	Lele35g0858	380	Pfam	Zinc-binding dehydrogenase	206	336	IPR013149	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele35g0858	Lele-ChrLele35	7461031	7465370	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele35g0858	15	380	Monolignol Biosynthesis Gene Families	AT1G72680	25.000	1.70e-16	78.2