Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g0826 ATGTCGGCGAGCCCTAACCATGAAGAGCCATCCCCATCTTTGTCTTCGTCATCGTCACTGCCTTTAAGAAAACAAAGGCCACCTCCGATTTCTATTCCCTCAGATTTCTCATCACCCTGTGACGGTGTCTTAAATCTTGGGGCTTCATCACTGGTTCAAATGTGGGAAAAGAGACTAACCCAATCTTCAAACACAACGACGAAGTCGTGGTCAACTCCGAAATCTAGCCCTAACTCAACATCTTCATCATTATCACCACAAAGTTCATCATCATCAGAAGCAGATTCATCACCACAAGGGCAGATTCATCACAATGAGGGAGATCATCTTCGTTGTCGTGAACATCATCAGAGCGAGGGATCAGTGGTGAGGGTGGCCGATATTATCAAAAGATTAACAGCGACGAGTAGTGAAGAGATTGTGGATCAAGCTCATCATCAAGATCATCAAAATTATTATTGTGTAGGATCTCCAGAACAATCATTAATAGAGAATGGAAGCTTTGTGATAAGATCACCAAGAATTAGAGGAAGACAAGGCTTTAATGATTTGCTTATGCAAATGGAGCGTGATCGTCATGGCGAGCTTAATAATCTTGCTGATCGTGCGCCTGTTTCAAAGTTTTCTCATAAATGTCGGATTCAGGCATTGCTTCGACTAAGACTAATGCAACGTGGCATAGTGGCTAAGGATCCACGTGGCTCACCATCAACAACATCACAAATGATTAAGCCAAAGCAATTACCTCAAGGATCTGTAATTATGCGCTTAAGGGAAAGATTTAGCTTAGGAATAAAAAATGGAACTGCATCAATTGAAGCAGAAGTAGCTGAACCAAGAACTCCAGATAGAGAAAAAGAAAACAAAGTCTCATCACCAGTATACAATCTTCCAAACCCTACCCAAAACCCTGTGTTCCATACAGATCACAACAACAAAGAAGAAGAGGAGGAGGAGGAAGAAGCACCTCCATGCTCAGATGTCTCTGTAATGAGCTCCGAGGCTCGAAATGCAGAAACAAATTCTTCTTCCATGGCTGATATGAATGCAGCTGAATCAGAGGTACCAAAGAATGTTGAAGGAATAAGAGAAGAGAAGCATATTAATAATGTTTCTGATGGGATGGAAGAAGAAGAAGAAGGAAGTTATGAGGATGAGTATGGTGAGAAAATATATGATGAGATAAAAGAGGAAGAACAGGTAGAGAGCAGTGAAGCTAATTTTGATTGGATTAGTCAGATTTCTAAACCTAAGAGCTATTGGGAAGATCTCAGGCAGGCTTGGTACAAGGAGGTGCTTGATGGTGAATCACAAAATAATGGTGATATCTACAAACTCCTTCAAAGAAGAACAGTGTCAAATTTTCTATGTAGTGACTTCCGAGAAAAAATGGACAAATTAATGGAGTCTCACAAGGGAACACAAGCAGACCTATTGGCTAGTCAAGAGGGCGATGAAGAAGTCAACCCCCACGAGGAAATAGGGCAACTGATAGCAATTTTACTTCAAAAAATGGATAATCCTGCAAAAGAAGAAGAAGCAGCAGAAGAAGAAGATGATGAGGAGGAGGAGGAGGAAATTTTGATAAGTAGTTCATATAATGGAGAGAGTGACTCTATGAACCACTCATCATCGCCATCACAATGGCGTTTCGATGATGATTCCGCATCCTTAACACAACCTTCTCAATCTCCATATTTCTTTCACAATAATTTTTCGCTCACCAATAATCCTCCTTCTATTGAAATGGAACTGATATATGATCTGAAAGGGCATATGAAGCAGCTGTATCAAGAGATGTCTGAGTTAAGGAAATCACTAAGGAGCTGCATAGATATGCAAATGAGCTTACAAAAATCATTCAATCGAGAGAATGATCATACAGCTAAGGGAAAGAAGTCCCATGATAGAGTAGTGAAGAAAGGAAACTGTTGTATCTGCTCAAAGACGAAAGCCGATTCACTTTTCTACAGATGTGGCCATATGTGCACGTGCCTAAAATGTGCCAATAAGTTACAATGGAAGAAAGGGATGTGTCCAATCTGTGAGGCTCCAATAGTTGATGTTGTTCGAGTTTATGTTGATGCTTAG 2091 0.406 MSASPNHEEPSPSLSSSSSLPLRKQRPPPISIPSDFSSPCDGVLNLGASSLVQMWEKRLTQSSNTTTKSWSTPKSSPNSTSSSLSPQSSSSSEADSSPQGQIHHNEGDHLRCREHHQSEGSVVRVADIIKRLTATSSEEIVDQAHHQDHQNYYCVGSPEQSLIENGSFVIRSPRIRGRQGFNDLLMQMERDRHGELNNLADRAPVSKFSHKCRIQALLRLRLMQRGIVAKDPRGSPSTTSQMIKPKQLPQGSVIMRLRERFSLGIKNGTASIEAEVAEPRTPDREKENKVSSPVYNLPNPTQNPVFHTDHNNKEEEEEEEEAPPCSDVSVMSSEARNAETNSSSMADMNAAESEVPKNVEGIREEKHINNVSDGMEEEEEGSYEDEYGEKIYDEIKEEEQVESSEANFDWISQISKPKSYWEDLRQAWYKEVLDGESQNNGDIYKLLQRRTVSNFLCSDFREKMDKLMESHKGTQADLLASQEGDEEVNPHEEIGQLIAILLQKMDNPAKEEEAAEEEDDEEEEEEILISSSYNGESDSMNHSSSPSQWRFDDDSASLTQPSQSPYFFHNNFSLTNNPPSIEMELIYDLKGHMKQLYQEMSELRKSLRSCIDMQMSLQKSFNRENDHTAKGKKSHDRVVKKGNCCICSKTKADSLFYRCGHMCTCLKCANKLQWKKGMCPICEAPIVDVVRVYVDA 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g0826 696 MobiDBLite consensus disorder prediction 512 529 - -
Lele35g0826 696 MobiDBLite consensus disorder prediction 508 557 - -
Lele35g0826 696 ProSiteProfiles Zinc finger RING-type profile. 644 683 IPR001841 -
Lele35g0826 696 MobiDBLite consensus disorder prediction 57 101 - -
Lele35g0826 696 MobiDBLite consensus disorder prediction 330 349 - -
Lele35g0826 696 MobiDBLite consensus disorder prediction 292 307 - -
Lele35g0826 696 MobiDBLite consensus disorder prediction 274 349 - -
Lele35g0826 696 Pfam Zinc finger, C3HC4 type (RING finger) 641 688 - -
Lele35g0826 696 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 619 695 IPR013083 -
Lele35g0826 696 MobiDBLite consensus disorder prediction 1 24 - -
Lele35g0826 696 MobiDBLite consensus disorder prediction 530 557 - -
Lele35g0826 696 PANTHER BNAC05G24000D PROTEIN 14 695 - -
Lele35g0826 696 MobiDBLite consensus disorder prediction 57 105 - -
Lele35g0826 696 MobiDBLite consensus disorder prediction 1 43 - -
Lele35g0826 696 SUPERFAMILY RING/U-box 643 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g0826 Lele-ChrLele35 6778220 6783444 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g0826 644 693 C3H Transcription Factor Family AT4G22250 34.000 7.28e-06 45.8