Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g0812 ATGGCGGGTCGGTTCGGATTTGGTTCCTCCGCTTCGACATCATTGATCGTCACCAACACGCCTTCGCAGGACCTCGCCCTCACCAATCTTGCCTTCTGTTCCCCTTCTGATCTTCAGAAGTTCGCTGTCTCTGGTTACAGAAACCTCTTCCTGGCTTTGATTGGCGATTCCTTTAGCATACGTAGTGGCCATATTGCACTTAACTCCATTCAACGTCGGTGTGTCAAAGTTTCTGCTGCTGAATCCATATCTGTGAGCAGATTCACCCCACCAGAAAACTTCAGCCTTGCGGTGTTAACGCTTGAGCTGGACTTCATTAAAAGAGGAAGCAGAAGTGAACAAATTGATGCTGTTCTTCTGTCCAAGCAACTGAAGAAGAGATTTATAAATCAGGTTATGACAGCTGGGCAGAAAGTATTATTTGAGTTCCATGGAAATAATTATAACTTTACCGTCAGTCAAGCAGTTGTTGAGGGCCAAGAAAAGTCTACTCTTGAAAGAGGGATGATTTCAGATGACACATACATTATTTTTGAAGCATCACGTGACAGTGGAATCAAGATTGTTAATCAGCGTGAGGGTGCCACTAGCAACATTTTTAAGCAGAAAGAGTTTAATCTTCAGTCTCTGGGTATTGGAGGTCTGAGTGCGGAATTTGCAGATATATTTCGAAGAGCTTTTGCTTCTCGTGTTTTTCCTCCTCACGTGACATCCAAGCTAGGTATCAAGCATGTGAAGGGAATGCTACTTTATGGGCCTCCTGGTACTGGAAAAACTCTAATGGCACGTCAAATAGGAAAAATTTTGAATGGAAAGGAGCCAAAGATTGTCAATGGCCCTGAAGTCTTGAGTAAATTTGTTGGTGAAACTGAAAAGAATGTTAGGGACCTCTTCGCCGATGCTGAACAAGATCAGAGGACTAAAGGGGACGAAAGTGATTTGCATGTCATCATTTTTGATGAAATTGATGCTATTTGTAAGTCAAGAGGTTCAACTAGGGATGGTACTGGAGTTCATGATAGTATTGTGAACCAACTTCTTACTAAGATAGATGGTGTGGAATCACTGAATAATGTTTTGCTTATTGGAATGACCAACAGAAAAGACATGCTTGATGAAGCTCTTTTAAGACCGGGCCGACTAGAAGTACAGATTGAGATAAGCCTTCCTGATGAAAATGGCCGACTGCAAATTCTCCAAATTCATACTAACAAGATGAAAGAGAATTCTTTCCTGGCTCCTGATGTGAATCTTCAAGAGCTTGCTGCTCGAACAAAAAACTACAGTGGTGCAGAACTTGAAGGTGTGGTGAAAAGTGCAGTCTCATTTGCTTTAAATAGACAACTAAGTCTTGATGATCTCACCAAGCAAGTTGAGGAAGAGAATATTAAGGTAACGATGGAGGACTTTTTGAATGCACTGCAAGAAGTTATTCCTGCATTTGGAGCTTCCACTGATGACCTTGAAAGATGCAGACTCCATGGGATGGTAGACTGCGGTGATCGACACAAGCACATTTATCAAAGGGCTATGCTACTAGCCGAGCAAGTGAAAGTGAGTAGAGGAAGCCCGATTATCACTTGTCTTCTTGAGGGTACTGGTGGCAGTGGCAAAACAGCACTTGCAGCTACTGTTGGTATTGACAGTGATTTCCCATATGTGAAGATAGTTTCTGCTGAATCAATGATTGGACTGCATGAGAGCACTAAATGTGCACAGATTATCAAGGTATTCGAGGATGCATACAAGTCACCATTGAGTGTCATTGTTCTTGATGACATTGAGAGGTTATTGGAGTATGTGCCCATTGGTCCACGGTTTTCAAATTTGATTTCACAGACACTATTGGTCTTGCTTAAACGGCTTCCTCCAAAGGGTAAAAAACTGCTGGTTATTGGTACGACAAGTGAGTTGGTTTTCTTGGACTCAATTGGATTTTGTGATACCTTCTCTGTTACTTATCATATTCCTACGTTGAGCACAAATGATGCGAAGAAGGTGCTACGACAGCTGAATGTTTTTGCTGATCAAGATATTGATGCTGCAGCAGAGGCCTTGAATGATATGCCTATCAAGAAGCTATACATGTTGATTGAGATGGCTGCCCAAGGACAGCATGGTGGATCTGCAGAAGCCATATATTCTGGCAAAGAGAAGATTCAGATCTCTCACTTCTATGACTGCCTCCAAGATGTTGTTCGTATATAA 2208 0.4216 MAGRFGFGSSASTSLIVTNTPSQDLALTNLAFCSPSDLQKFAVSGYRNLFLALIGDSFSIRSGHIALNSIQRRCVKVSAAESISVSRFTPPENFSLAVLTLELDFIKRGSRSEQIDAVLLSKQLKKRFINQVMTAGQKVLFEFHGNNYNFTVSQAVVEGQEKSTLERGMISDDTYIIFEASRDSGIKIVNQREGATSNIFKQKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQDQRTKGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQIEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVVKSAVSFALNRQLSLDDLTKQVEEENIKVTMEDFLNALQEVIPAFGASTDDLERCRLHGMVDCGDRHKHIYQRAMLLAEQVKVSRGSPIITCLLEGTGGSGKTALAATVGIDSDFPYVKIVSAESMIGLHESTKCAQIIKVFEDAYKSPLSVIVLDDIERLLEYVPIGPRFSNLISQTLLVLLKRLPPKGKKLLVIGTTSELVFLDSIGFCDTFSVTYHIPTLSTNDAKKVLRQLNVFADQDIDAAAEALNDMPIKKLYMLIEMAAQGQHGGSAEAIYSGKEKIQISHFYDCLQDVVRI 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g0812 735 ProSitePatterns AAA-protein family signature. 359 377 IPR003960 GO:0005524|GO:0016887
Lele35g0812 735 Gene3D - 10 88 - -
Lele35g0812 735 CDD AAA 246 389 - -
Lele35g0812 735 FunFam Vesicular-fusion ATPase SEC18 200 390 - -
Lele35g0812 735 Gene3D - 486 657 IPR027417 -
Lele35g0812 735 SMART CDC48_N_2 14 91 IPR003338 -
Lele35g0812 735 Gene3D - 198 389 IPR027417 -
Lele35g0812 735 SMART AAA_5 524 645 IPR003593 -
Lele35g0812 735 SMART AAA_5 244 391 IPR003593 -
Lele35g0812 735 SUPERFAMILY ADC-like 14 91 IPR009010 -
Lele35g0812 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 487 IPR027417 -
Lele35g0812 735 Pfam Cell division protein 48 (CDC48), domain 2 114 167 IPR004201 -
Lele35g0812 735 PANTHER VESICULAR-FUSION PROTEIN NSF 13 734 IPR039812 GO:0016887|GO:0035494
Lele35g0812 735 Pfam AAA+ lid domain 415 470 IPR041569 -
Lele35g0812 735 SUPERFAMILY Cdc48 domain 2-like 91 193 IPR029067 -
Lele35g0812 735 Pfam ATPase family associated with various cellular activities (AAA) 529 638 IPR003959 GO:0005524|GO:0016887
Lele35g0812 735 Pfam ATPase family associated with various cellular activities (AAA) 248 388 IPR003959 GO:0005524|GO:0016887
Lele35g0812 735 Gene3D - 91 188 - -
Lele35g0812 735 FunFam vesicle-fusing ATPase isoform X1 486 657 - -
Lele35g0812 735 Gene3D - 390 477 - -
Lele35g0812 735 FunFam Vesicle-fusing ATPase 390 477 - -
Lele35g0812 735 CDD AAA 529 636 - -
Lele35g0812 735 FunFam Vesicle-fusing ATPase 92 188 - -
Lele35g0812 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 490 699 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g0812 Lele-ChrLele35 6589444 6598898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g0812 239 455 Calmodulin-binding Proteins AT3G56690 38.914 3.72e-40 157