Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g0647 ATGCCTGATCATCAAGAAAACAACATGGCAATATCAGCCGAAGCTAATAACAACATCAAGGCTAGAAAGAAATCATCATCCAGAGGCCATCCTCATTTCGTCGGAGTTCGTCAAAGGCCGTCAGGACGGTGGGTGGCTGAAATCAAAGACTCCCTTCAGAAGGTCCGGCTTTGGCTCGGAACATTCGACACAGCCGAGGATGCTGCTTGTGCCTATGACACAGCCGCACGCGCTTTGCGTGGCGCCAACGCTCGCACCAACTTCGACTTGCCGGATCCTGGAGGAGGCGGTGGGGGCGCCGCCACCCAACGCGGTGGCAGTAGTTTCAGCTACATGCCGGAGAATCTTGAACCGTTCTCGTTTGAGGACACGTGTGTGGGATCAGATCATCATGACCTCCTTGGAGCACTCAAGGCCAAGCTGTTTGATGACAATGGAGGAGTAGTGAGATTTCCTTCTCAGTTATCATCTAATAATAGCCAAATCTTGCCAGATTTTTTAAACCCTAATAATAATAATCCAGGGTTTGCAAGCACGTCTTTGTCAAGCACAAGCATGAGTGCGCCTAAGAGCACTCACACCAATAATAATAACAATAGTAATATGCTCATCTCAGAGCATCACGACAATGGAGGTTCTATAGCAGCTGCAAATAATAACTCTTCTACAGTGCCCTTAATGACTACTTCATGGTCCAATAACAACAACGAGATAGGTAATTATGAATTGCCTAATTGGTCTACAGGTCCTACACAGATCATGAACCAGGTGGTTCCTGAAAATAATAATAGCTTGTTTGCATCTTCAAGTAATTCTCCATGGCCAACACTATCTGGGGTTCACGTTATTGAGCCTACGATGAATATGATGTATTCAGATGTTGTCAACCTTGTTAACATCGACCAGAGAGAACATGATTCAGATAGAGCAGTCTTAGGATATTCTGATTGTAATAATAATCAAAATATGATGTTTTCTGAGAATCAAATTGGGGCTTCAGGTAGCAGAAGTAATAATGCTCAAATTGGAGGACTACACGAAGGGTTTTGGACAAGTACAGATCAGCAGCAGCAGCAAGTTCTTGTGCAGAGTGACAACTATGGCGGTTGGTTTAGTTCGAATAATAATAATAATAACGGTACGTGGGATCCTTTGCTTTTTGTGTCGTCTGAATTAGGTTGA 1182 0.4425 MPDHQENNMAISAEANNNIKARKKSSSRGHPHFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAACAYDTAARALRGANARTNFDLPDPGGGGGGAATQRGGSSFSYMPENLEPFSFEDTCVGSDHHDLLGALKAKLFDDNGGVVRFPSQLSSNNSQILPDFLNPNNNNPGFASTSLSSTSMSAPKSTHTNNNNNSNMLISEHHDNGGSIAAANNNSSTVPLMTTSWSNNNNEIGNYELPNWSTGPTQIMNQVVPENNNSLFASSSNSPWPTLSGVHVIEPTMNMMYSDVVNLVNIDQREHDSDRAVLGYSDCNNNQNMMFSENQIGASGSRSNNAQIGGLHEGFWTSTDQQQQQVLVQSDNYGGWFSSNNNNNNGTWDPLLFVSSELG 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g0647 393 SUPERFAMILY DNA-binding domain 32 89 IPR016177 GO:0003677
Lele35g0647 393 Pfam AP2 domain 31 81 IPR001471 GO:0003700|GO:0006355
Lele35g0647 393 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Lele35g0647 393 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Lele35g0647 393 MobiDBLite consensus disorder prediction 87 109 - -
Lele35g0647 393 Gene3D AP2/ERF domain 32 90 IPR036955 GO:0003700|GO:0006355
Lele35g0647 393 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 28 255 - -
Lele35g0647 393 MobiDBLite consensus disorder prediction 170 205 - -
Lele35g0647 393 FunFam ethylene-responsive transcription factor RAP2-11 31 90 - -
Lele35g0647 393 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Lele35g0647 393 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Lele35g0647 393 CDD AP2 31 89 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g0647 Lele-ChrLele35 4465092 4466273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g0647 20 88 AP2-EREBP Transcription Factor Family AT5G19790 67.143 2.11e-25 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele35g0647 AP2 7.3e-12 CL0081