Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g0605 ATGCAAGCATATCCTCTTTCTGATAGAAGAAGGAAAAGAATTTCCCAGTTCCCTGAGAACTGTGTTGCTGCTTATAACTCTTTTATCGCTTTTGTGTGTTTTCATTCCGCAGGTTTTGAGAGGTTGATTTCTGCAGCCATGGCGTTCCCGAATAATAATCAAGCCATGTCGGATTCGTCGTCTCCACAGAGAAAGATGGGGAGAGGGAAGATAGCGATAAAGAGGATCGAGAACACCGCAAATCGCCAGGTCACTTTCTGTAAGCGCAGAAATGGCCTCCTCAAGAAGGCTTATGAGCTCTCTGTGCTTTGTGATGCTGAAGTCGCTCTCATCGTCTTCTCCACTCGTGGTCGCCTCTATGAATATGCTAATAACAGTGTGAAGGCAACAATAGAGAGGTACAAGAACGCATGTTCAGATACTTCTGGTGCTGGATCCACTTCTGAAGCTAATGCTCAGTATTATCAGCAAGAAGCTGCGAAACTTAGGGCTCAAATTAGTAACATGCGCAACAACAACAGGCAAATGATGGGGGAGACTTTGGCAGGTATGAGTGCTAGAGATCTCAAGAACTTGGAGGGTAAGTTAGAGAGAGGCATCAGCAGAATTCGTTCCAAAAAGAATGAGCTTCTCTTTGCTGAAATTGACTACATGCAGAAGAGGGAGGTAGACTTGCACAATAACAACCAGCTTCTTCGAGCTAAGATAGCAGAAAGTGAGAGAAACCAGCAGCAGCAAAACATGAATGTGATGCCAGGAGGTGGAGGGTCATCAAACTATGAAGCAATACAGTCTCTAAATGAGCCTACTCATCAATATGACTCACGAGGCTTCTTCCAAGTCACTGGTTTACAACCTAGTCATCACTACGCTCCCCAAGACCACATCTCCCTCCAATTAGTGTGA 906 0.4492 MQAYPLSDRRRKRISQFPENCVAAYNSFIAFVCFHSAGFERLISAAMAFPNNNQAMSDSSSPQRKMGRGKIAIKRIENTANRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKATIERYKNACSDTSGAGSTSEANAQYYQQEAAKLRAQISNMRNNNRQMMGETLAGMSARDLKNLEGKLERGISRIRSKKNELLFAEIDYMQKREVDLHNNNQLLRAKIAESERNQQQQNMNVMPGGGGSSNYEAIQSLNEPTHQYDSRGFFQVTGLQPSHHYAPQDHISLQLV 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g0605 301 ProSitePatterns MADS-box domain signature. 68 122 IPR002100 GO:0003677|GO:0046983
Lele35g0605 301 ProSiteProfiles K-box domain profile. 152 242 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele35g0605 301 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 75 122 IPR002100 GO:0003677|GO:0046983
Lele35g0605 301 Pfam K-box region 148 236 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele35g0605 301 CDD MADS_MEF2_like 67 140 IPR033896 GO:0000977|GO:0045944
Lele35g0605 301 PRINTS MADS domain signature 88 103 IPR002100 GO:0003677|GO:0046983
Lele35g0605 301 PRINTS MADS domain signature 103 124 IPR002100 GO:0003677|GO:0046983
Lele35g0605 301 PRINTS MADS domain signature 68 88 IPR002100 GO:0003677|GO:0046983
Lele35g0605 301 ProSiteProfiles MADS-box domain profile. 66 126 IPR002100 GO:0003677|GO:0046983
Lele35g0605 301 Coils Coil 189 209 - -
Lele35g0605 301 Coils Coil 152 179 - -
Lele35g0605 301 SMART madsneu2 66 125 IPR002100 GO:0003677|GO:0046983
Lele35g0605 301 Coils Coil 229 249 - -
Lele35g0605 301 Gene3D - 79 162 IPR036879 GO:0003677|GO:0046983
Lele35g0605 301 FunFam agamous-like MADS-box protein AGL11 78 161 - -
Lele35g0605 301 PANTHER SERUM RESPONSE FACTOR HOMOLOG 66 244 - -
Lele35g0605 301 SUPERFAMILY SRF-like 67 138 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g0605 Lele-ChrLele35 4077321 4083730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g0605 57 301 MADS-box Gene Family AT3G58780 60.976 2.42e-101 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele35g0605 K-box 1.2e-26 No_clan