Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g0576 ATGGGGCGAGGAAGATTGGCGATGACACTGATAGAGAAAGAGAAATCCAGAAAAGCGACGTTTCAGAAGAGAAAGAATGGAATCCTGAAGAAAACTCATGAGCTTTCTACCCTATGTGGAGTTGACTGTTGCTTGATAGTCTATAGCCCTAACTCCATTAACGACCTTCCTGAGATTTGGCCTCCAAATCACACAAAGGTGAATGAAATCATTGAGAAGTATAGGGCGAAGACCACTGAGAAAGGTCCCAAGAAGTACAATGTAACGGATTTCTTCAAGGACAGGAAGAACAAGGTGGAAGCTGAAGCATGCAAGCTTCAGAAGGAGAGGCTCCGAAAACTCTATCCAACGTGGGACTTCTCTTTTGACAAACTTGGAGAAGAACAGCTGAGCATGTTCGTCGCCCTGTTGGATTTGAAAATCGAAGATTGCAAAGAGAGGATCAACAAGTTGAAGAAGAAGCGCTACATAGAAGAAAAACAACAACAAGAAGGAACAGATCAATCTTTAGACAAATCATCAGCTTCAGTTTCAAACAGAAGCCATCTCAGTTTCATGCACAACAACAATAACAGCAACTCTCATCATCATCAAACCCAAGATTTTCCTCTCAAGTCTGAAGATCATCATCATCAACAACGTGTGATGCTTCATCCCTTTCATCCAAATCTGATGCCTTTGATGATGATCACACAGAATGATTCTGCAGCAACACAGATCAGTGATGCGTTTAGCCATCATTATGATCTGATGAGAGAATCTTGTCCTTCTTCTTCATGCTGTTACAATGATAATAACAACAATAACTATCCTTATCTGCAGAATAGTAATATAATGCAGTATCATCATCATGAAGCAAATTTGCAGGTCCTTAATCCAGCTTCTCTGATGATGCAAGAACTGCAGAACCACCACGGTGTTGATGGAACAATCCGCTGGGTAGGAGTACAAGATTCTTCTTCTGCGATCGTTTCTTTCGACATAGCGACGGAAGTGTTTACATTAACATCAATACCAATAACATTTGTGCGTCGTGATTTAAGTGCTAAAACTACTCTTGGTGTTTGCCCGAACAAGTATGCTATAGTTCGGCATTGCACGGATACGTCTTTGAATTCTTTAGATATATGGGTGATGGAGGACGTTGCTTCAATTGGTAAGTTTCACACCTTTCCTTCCTCCCCTATTGCCGTGTCTGTGTGGATTGAGGATGTGAAATTGAACGTTGTGCTATGGTTCTCTGGTAGTGCGTGTGTGAGTGATTGCTATGGCTGCCGTGCTGTTTTGCGATGTGGACGGTGCCATGAAAATCTGACTCAAGACTTGGATGGTGAAGGTTGCATGTGTTTAAATGATACAGGATTAAATCAATTGAGCTACAGTAATTAA 1389 0.4147 MGRGRLAMTLIEKEKSRKATFQKRKNGILKKTHELSTLCGVDCCLIVYSPNSINDLPEIWPPNHTKVNEIIEKYRAKTTEKGPKKYNVTDFFKDRKNKVEAEACKLQKERLRKLYPTWDFSFDKLGEEQLSMFVALLDLKIEDCKERINKLKKKRYIEEKQQQEGTDQSLDKSSASVSNRSHLSFMHNNNNSNSHHHQTQDFPLKSEDHHHQQRVMLHPFHPNLMPLMMITQNDSAATQISDAFSHHYDLMRESCPSSSCCYNDNNNNNYPYLQNSNIMQYHHHEANLQVLNPASLMMQELQNHHGVDGTIRWVGVQDSSSAIVSFDIATEVFTLTSIPITFVRRDLSAKTTLGVCPNKYAIVRHCTDTSLNSLDIWVMEDVASIGKFHTFPSSPIAVSVWIEDVKLNVVLWFSGSACVSDCYGCRAVLRCGRCHENLTQDLDGEGCMCLNDTGLNQLSYSN 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g0576 462 Coils Coil 134 161 - -
Lele35g0576 462 PANTHER MADS BOX PROTEIN 3 151 - -
Lele35g0576 462 MobiDBLite consensus disorder prediction 183 211 - -
Lele35g0576 462 SUPERFAMILY SRF-like 1 79 IPR036879 GO:0003677|GO:0046983
Lele35g0576 462 MobiDBLite consensus disorder prediction 183 199 - -
Lele35g0576 462 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele35g0576 462 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele35g0576 462 Pfam F-box associated domain 308 383 IPR013187 -
Lele35g0576 462 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Lele35g0576 462 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Lele35g0576 462 MobiDBLite consensus disorder prediction 159 178 - -
Lele35g0576 462 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Lele35g0576 462 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Lele35g0576 462 CDD MADS 2 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g0576 Lele-ChrLele35 3796029 3801451 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g0576 1 147 Type I MADS-box Gene Family AT5G55690 37.748 2.16e-24 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele35g0576 FBA_3 6.2e-06 CL0162