Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g0573 ATGGGGCGAGGAAGATTGGCGATGACACTGATAGAGAAAGAGAAATCCAGAAAAGCGACGTTTCAGAAGAGAAAGAATGGAATTCTGAAGAAAGCTCATGAGCTTTCTACACTATGTGGAGTTGACTGTTGCTTGATAGTCTATAGCCCTAACTCCATTAACGACCTTCCTGAGATTTGGCCTCCAAATCACACAAAGGTGAATGAAATCATTGAGAAGTATAGGGCGAAGAACACTGAGAAAGGTCCCAAGAAGTACAATGTAATGGATTTCTTCAAGGACAGGAAGAACAAGGTGGAAGCTGAAGCGTGCAAGCTTCAGAAGGAGAGGCTCCGAAAACTCTATCCGACGTGGGACTTCTCTTTTGACAAACTTGGCGAAGAACAGCTGAGGATGTTCGTCGCCCTGTTGGATTTGAAAATCGAAGATTGCAACGAGAGGATCAACAAGTTTAAGAAGAAGCGCTACATCGAAGAAAAACAACAAGAAGAAGGAACAGATCAATCTTTAGACAAATCATCAGCTTCAGTTTCGAACAGAAGCCATCTCAGTTTCATGCACAACAACAGCAACAACACTACGTTGTCAGCTCATCATCATCAAGCCCAAGATTTTACTCTCAAGTCTGAAGATCATCATCATCAACAACGTGTGATCCTTCATCCCTTTCATCCAAATCTGATGCCTTTGATGATGATCACACAGAATGATTCTGCAGCAACACAGATCAGTGATGCGTTTAGTCATCATTATGATCTGATGAGGGAATCTTGTCCTTCTTCTTCATACTGTTACAATAATAATAACAGCAATTACTATCCTTATCTGCAGAATAGTAATATTATGTAG 849 0.4099 MGRGRLAMTLIEKEKSRKATFQKRKNGILKKAHELSTLCGVDCCLIVYSPNSINDLPEIWPPNHTKVNEIIEKYRAKNTEKGPKKYNVMDFFKDRKNKVEAEACKLQKERLRKLYPTWDFSFDKLGEEQLRMFVALLDLKIEDCNERINKFKKKRYIEEKQQEEGTDQSLDKSSASVSNRSHLSFMHNNSNNTTLSAHHHQAQDFTLKSEDHHHQQRVILHPFHPNLMPLMMITQNDSAATQISDAFSHHYDLMRESCPSSSYCYNNNNSNYYPYLQNSNIM 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g0573 282 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Lele35g0573 282 MobiDBLite consensus disorder prediction 159 178 - -
Lele35g0573 282 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Lele35g0573 282 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Lele35g0573 282 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 189 - -
Lele35g0573 282 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele35g0573 282 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele35g0573 282 SUPERFAMILY SRF-like 1 79 IPR036879 GO:0003677|GO:0046983
Lele35g0573 282 Coils Coil 134 154 - -
Lele35g0573 282 CDD MADS 2 62 - -
Lele35g0573 282 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g0573 Lele-ChrLele35 3746137 3747606 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g0573 1 151 Type I MADS-box Gene Family AT5G55690 38.065 1.09e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele35g0573 SRF-TF 5.3e-20 No_clan