Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g0541 ATGGCGAAGGAAGCTACGAGGTCGCGAAAGAGGTCTCTCTCATCACCCTCTGCTTCTGCTTCTGATGAACGCTCTGCACGAACTTCTTCTGGCGGGATAGTGTTGAGGGTAAAATTCAATGAGGGGATGAAGAGATCTTCCCAGCTGACTAAGTCAGGGAAGAAACCCAAAGCCAAGCAAAAGAAGATTAACAAAAAACTTGATGCTAAGAAACCAAAGAAACCCCCAACTGCTTTCTTCTACTTCTTGGAGGATTTTCGTAAGGAATTTCGAGAGCAGAATCCAGACGTCAAGTCAATGCGTGATATTGGCAAGGCTTGTGGAGAGAAGTGGAAAACAATGACTTATGAGGAGAAGGTTCAATACTACGATATAGCCACAGAAAAACGAGCAGAATTCGATAGAGCAATGATCGAATATAACAAGAAAATGGAAAGTGGAGAGTACGAAGAAACTGATGAAGAATCAGAGTTTGATGATGCGTAA 486 0.428 MAKEATRSRKRSLSSPSASASDERSARTSSGGIVLRVKFNEGMKRSSQLTKSGKKPKAKQKKINKKLDAKKPKKPPTAFFYFLEDFRKEFREQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIATEKRAEFDRAMIEYNKKMESGEYEETDEESEFDDA 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g0541 161 Pfam HMG (high mobility group) box 72 141 IPR009071 -
Lele35g0541 161 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 72 141 IPR009071 -
Lele35g0541 161 SUPERFAMILY HMG-box 65 146 IPR036910 -
Lele35g0541 161 MobiDBLite consensus disorder prediction 50 69 - -
Lele35g0541 161 MobiDBLite consensus disorder prediction 11 28 - -
Lele35g0541 161 Gene3D High mobility group box domain 65 156 IPR036910 -
Lele35g0541 161 CDD HMGB-UBF_HMG-box 77 137 - -
Lele35g0541 161 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 46 157 IPR031061 -
Lele35g0541 161 MobiDBLite consensus disorder prediction 1 74 - -
Lele35g0541 161 SMART hmgende2 71 142 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g0541 Lele-ChrLele35 3482230 3486340 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lele35g0541 HMG_box 2.8e-18 CL0114