Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g0539 ATGCTATGCGCTCGTTCCCTGAATTCAAAGCTCAAAGTGAAACCAAGCAACTGCTTGATGAAGAACGTGCGTGAGAGAGAAAGGGTTGGCCAACAAGATAGTATACGGAAGGTTTTGTGGCTTCTCCGCCGTCTTGATACCAAGTCGCCGCCGTCACGCACCAGAATAGGGTTGCCTTTGATCTGTATGGATCGGCGAGGTCGGAGGCAAGCAGAAGGTGAAGAAATGGATATTAGCGAAGATGTTAGGGCAGCTCACAAACGAGAATTCGCCGATTTCCTGGATCAGGATGTTGGGAAAGGGATATACATGGACGAGATTAAAGCAATGATCAACCACAAGCGTCGTCGCCTCATCGTCAATATCTCCGATCTTCATAGCTTTCGTGATTTGGGTAATAGGATTCTCAGGAACCCTAGTGAGTACATACAATCATTCTGTGATGCAGTGACGGATGCTGCTCGTGCTATTGACCCCAAGTATTTGAAGGAAGGAGAACAAGTGCTTGTAGGATTTGAAGGCCCCTTTGTTTCCCGTCGGGTCACCCCAAGGGAGCTTCTATCTGGATTCATAGGTTCTATGGTTTGCGTCGAGGGCATTGTCACTAAATGTTCGCTTGTGAGGCCGAAGGTTGTTAAAAGTGTTCACTTCTGCCCTACAACAAAGAAATTCACCAGTCGCGAATACCGTGATATTACTTCCAATATGGGTTTGCCCACAGGCTCTGTTTATCCCACCAGGGATGAAAGTGGCAACTTATTGGTGACTGAGTATGGATTGTGCAAATATAAAGATCATCAAACCTTATCCATGCAAGAAGTTCCTGAGAATTCTGCGCCTGGTCAGCTTCCAAGAACAGTAGATGTGATAGTAGAGGATGACCTTGTTGACTCTTGCAAACCTGGGGATCGTGTGGCTATTGTGGGGATATATAAGGCCCTTCCAGGGAAAAGTAAAGGCAGTGTGAGTGGAGTATTCAGGACTGTGCTCATAGCTAATCACGTATCTCTTCTCAACAAAGAGGCTAATGCACCAATCTACAGTGCTGAAGATCTGAAAAACATAAAGAAGATTGCCGAAAGAGATGATGCATTTGACCTACTTGGTAATTCACTTGCACCTTCTATTTATGGGCATTCCTGGATAAAGAAAGCGGTGATTTTGTTGATGCTTGGTGGAGTAGAAAAGAACTTAAAGAATGGTACCCATTTGCGAGGTGACATTAACATGATGATGGTTGGTGATCCGTCTGTTGCCAAGTCTCAACTCTTAAGAGCAATCATGAATATTGCTCCCTTGGCCATATCTACTACAGGTCGTGGTTCTTCTGGGGTGGGTTTAACAGCAGCGGTTACTTCAGATCAAGAAACAGGGGAAAGAAGGCTAGAAGCTGGAGCGATGGTTCTTGCTGATCGAGGTGTTGTCTGCATTGACGAGTTTGACAAAATGAATGATCAAGATCGGGTTGCTATACATGAAGTTATGGAACAGCAAACTGTAACTATAGCCAAAGCTGGTATCCATGCATCTCTTAATGCTCGATGCAGTGTGGTGGCTGCTGCAAATCCCATATATGGAACTTATGACCGATCATTGACTCCAACAAAAAATATTGGACTCCCAGACTCCTTGCTTTCCCGATTTGATCTTCTATTTATTGTCTTGGATCAAATGGACCCTGATATTGATCGTCATATCTCAGAGCATGTATTGCGTATGCATCGTTACCATTCTGCCATTGATGGAGGGGAGGCAGCATTTGATGGTGCCTCAAGATATGGAAGAGAAGATGATGCAAACACTGACTCAGCTGTCTTTGTCAAATATAACCGGATGCTACATGGAAAGAAAATAGAAAAAGGTCGCAAGCGTGATGTGCTCACAATCAAGTTTCTTAAAAAGTATATTCATTATGCTAAGCATAGGATTCAACCTGAACTTACTGATGAGGCATCTGACCACATTGCCACATTTTATGCTGAGCTCAGAAATGCTGGTTCAAATGCTACGACTGGAGGAACCCTTCCTATCACCGCTAGAACTTTGGAAACCATAATACGTCTCTCAACGGCTCATGCCAAATTAAAATTGAGCAGACAGGTTTTAAAGTCTGATGTTGAAGCTGCTATCAAAATTCTTAATTTTGCAATATATCACAAAGAACTAACAGAAATGGAGGAGCGTGAGCAAGAGAGGGAGAAAGAGATGGAGAGGAAACGCAGGGCTGAGCAGCATCCTGGTGAAAATGATGAACCTAGTCGAGGTCCTAAAAATAGAAGAACGTCCACAGCTGAAGCCATGGAAGTTGATGAGACTTCGGCAGCCCAATCTGCTACCGGTCTCGCACCTGAAAGAATAGAAGCATTCAATTCTTTGTTTGGTCAGCATATGCGTGCCAATCGCTTGGATCTCATATCCATTTCCGATATAGAGAATGTTGTCAACCAAGGGGCAGAATCAAGTTACAGCAGAGAAGATATATTATTCCTATTAGAGAAGTTGCAAGATGACAATAGAGTGATGATAGCTGATGGAGTGAGGTTGAAGGAAGCAGAATCTCACTCTCCACTCTCCAGAGTTGATGCATCTACTTGCTGTGAGATCCTTGGGCAAAAATCACCAAACGCCGAAATGGTTTCCCGAAATCAACCAAAAGAAGACATCCCTAAGAAGCAATGGTCCTTGAGAGACTTCGAGATCGGAAAACCCCTTGGAAAGGGGAAATTCGGTAGAGTCTACGTCGCTCGAGAAGTTAAGAGCAAATATATTGTGGCGCTTAAGGTTATCTTTAAGGAACAAATGGAAAAGTACAGAATTCATCATCAACTTAGGAGAGAGATGGAGATTCAGACCAGTCTTCAGCATCCCAACGTTCTGCGTCTCTATGGTTGGTTTCATGATGCTGAGCGAATTTTCTTGATACTCGAGTATGCTCATAATGGTGAGCTTTACAAGGAGCTCAGAAAAAAAGGTTATCTCAATGAGAAGCAAGCAGCCACGTATATTTTGAGCCTCACAAAGGCGCTGGCATATTGTCATGAGAAGCATGTCATTCATAGGGATATAAAGCCCGAGAATTTGTTACTTGACCATGAGGGTCGCCTTAAGATTGCAGACTTTGGTTGGTCTGTACAGTCAAGAAGTAAGAGACATACCATGTGTGGAACATTGGATTATCTAGCACCAGAAATGGTAGAAAACAAAGAACATGATTTTTCTGTTGATAACTGGACTCTGGGTATACTTTGTTATGAATTCCTCTATGGTTCTCCCCCATTTGAGGCTGAGAGTCAAGTTGACACATTCAAGAGGATAATGAAGATTGACCTAAATTTCCCTTCTACTCCTACTGTTTCTTCAGAAGCCAAAAATCTGATTAGCCGGCTCTTGGTGAAAGATTCCACAAGAAGGCTATCACTTCAGAAGATTATGGAGCATCCTTGGATACTCAAGAATGCTGATCCTACGGGTAAAATTGACTCAAAGGTTTTATTGTGGTTGAATGAAGATATTGCCACACACACCCATACCCACATAAACAGGCTCATAAGAATTTTTGTAAACGAGTTGGAGTTTGGATTGGAGAAACATTATGGAGCTTGTCCAGCAAGAATCTTGGTGCATACGAAACTAATGAAGTCTAAAGTATCATCAGAGGATGATAAATCACGCACTGATTTTCCTGTCTTGCTTGTGTCTCCAATTCCAGTTCCCTTTCTAGCCCCGATATGA 3732 0.4309 MLCARSLNSKLKVKPSNCLMKNVRERERVGQQDSIRKVLWLLRRLDTKSPPSRTRIGLPLICMDRRGRRQAEGEEMDISEDVRAAHKREFADFLDQDVGKGIYMDEIKAMINHKRRRLIVNISDLHSFRDLGNRILRNPSEYIQSFCDAVTDAARAIDPKYLKEGEQVLVGFEGPFVSRRVTPRELLSGFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTKKFTSREYRDITSNMGLPTGSVYPTRDESGNLLVTEYGLCKYKDHQTLSMQEVPENSAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGIYKALPGKSKGSVSGVFRTVLIANHVSLLNKEANAPIYSAEDLKNIKKIAERDDAFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRHISEHVLRMHRYHSAIDGGEAAFDGASRYGREDDANTDSAVFVKYNRMLHGKKIEKGRKRDVLTIKFLKKYIHYAKHRIQPELTDEASDHIATFYAELRNAGSNATTGGTLPITARTLETIIRLSTAHAKLKLSRQVLKSDVEAAIKILNFAIYHKELTEMEEREQEREKEMERKRRAEQHPGENDEPSRGPKNRRTSTAEAMEVDETSAAQSATGLAPERIEAFNSLFGQHMRANRLDLISISDIENVVNQGAESSYSREDILFLLEKLQDDNRVMIADGVRLKEAESHSPLSRVDASTCCEILGQKSPNAEMVSRNQPKEDIPKKQWSLRDFEIGKPLGKGKFGRVYVAREVKSKYIVALKVIFKEQMEKYRIHHQLRREMEIQTSLQHPNVLRLYGWFHDAERIFLILEYAHNGELYKELRKKGYLNEKQAATYILSLTKALAYCHEKHVIHRDIKPENLLLDHEGRLKIADFGWSVQSRSKRHTMCGTLDYLAPEMVENKEHDFSVDNWTLGILCYEFLYGSPPFEAESQVDTFKRIMKIDLNFPSTPTVSSEAKNLISRLLVKDSTRRLSLQKIMEHPWILKNADPTGKIDSKVLLWLNEDIATHTHTHINRLIRIFVNELEFGLEKHYGACPARILVHTKLMKSKVSSEDDKSRTDFPVLLVSPIPVPFLAPI 1243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g0539 1243 SMART AAA_5 406 559 IPR003593 -
Lele35g0539 1243 CDD MCM3 367 716 - -
Lele35g0539 1243 Gene3D - 210 264 - -
Lele35g0539 1243 Gene3D - 346 739 IPR027417 -
Lele35g0539 1243 MobiDBLite consensus disorder prediction 726 766 - -
Lele35g0539 1243 Pfam Protein kinase domain 898 1149 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele35g0539 1243 Pfam MCM N-terminal domain 87 158 IPR027925 -
Lele35g0539 1243 FunFam DNA helicase 80 179 - -
Lele35g0539 1243 ProSitePatterns Protein kinases ATP-binding region signature. 904 931 IPR017441 GO:0005524
Lele35g0539 1243 ProSiteProfiles Protein kinase domain profile. 898 1149 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele35g0539 1243 Pfam MCM AAA-lid domain 631 714 IPR041562 -
Lele35g0539 1243 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 282 294 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Lele35g0539 1243 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 705 720 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Lele35g0539 1243 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 256 270 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Lele35g0539 1243 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 533 543 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Lele35g0539 1243 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 566 576 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Lele35g0539 1243 Pfam MCM P-loop domain 352 574 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele35g0539 1243 MobiDBLite consensus disorder prediction 726 781 - -
Lele35g0539 1243 Gene3D - 184 314 IPR012340 -
Lele35g0539 1243 Gene3D - 77 174 - -
Lele35g0539 1243 FunFam Aurora kinase A 890 981 - -
Lele35g0539 1243 PRINTS Mini-chromosome maintenance (MCM) protein family signature 465 479 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele35g0539 1243 PRINTS Mini-chromosome maintenance (MCM) protein family signature 493 506 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele35g0539 1243 PRINTS Mini-chromosome maintenance (MCM) protein family signature 517 529 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele35g0539 1243 PRINTS Mini-chromosome maintenance (MCM) protein family signature 405 420 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele35g0539 1243 PRINTS Mini-chromosome maintenance (MCM) protein family signature 544 552 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele35g0539 1243 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 80 762 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lele35g0539 1243 Gene3D Transferase(Phosphotransferase) domain 1 982 1180 - -
Lele35g0539 1243 SMART mcm 179 718 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lele35g0539 1243 CDD STKc_Aurora 897 1150 - -
Lele35g0539 1243 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1017 1029 IPR008271 GO:0004672|GO:0006468
Lele35g0539 1243 Gene3D Phosphorylase Kinase; domain 1 887 981 - -
Lele35g0539 1243 ProSiteProfiles MCM family domain profile. 364 570 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele35g0539 1243 FunFam DNA helicase 210 264 - -
Lele35g0539 1243 Pfam MCM OB domain 184 314 IPR033762 -
Lele35g0539 1243 ProSitePatterns MCM family signature. 473 481 IPR018525 GO:0003677|GO:0005524|GO:0006260
Lele35g0539 1243 FunFam Serine/threonine-protein kinase ark1 890 1162 - -
Lele35g0539 1243 SUPERFAMILY Protein kinase-like (PK-like) 885 1159 IPR011009 -
Lele35g0539 1243 SUPERFAMILY Nucleic acid-binding proteins 88 331 IPR012340 -
Lele35g0539 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 374 730 IPR027417 -
Lele35g0539 1243 SMART serkin_6 898 1149 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele35g0539 1243 Coils Coil 719 745 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g0539 Lele-ChrLele35 3459568 3472112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g0539 76 650 Core DNA Replication Machinery Family AT5G46280 81.629 0.0 965
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Lele35g0539 Pkinase 3.9e-74 CL0016