Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g0493 ATGGCCGCGTCAAGGGGCCAGCGGGGAGTTGGTGGGAGCGGAGAGCGAATCTTTTCGCTTACGACCGTCGGAAACATGATGAAGAAGGCGTTACCGCCGAAGGCGAGGATCTCTGCAGAAGCGAAAGAAACGGTCGAACAATGCTTGACAAAGTTCGTCGACTCTGTCACTAGCGAAGCCACCAATAATTGCAACAACAATGGGCACTCAGAGCTCACCGGCGACGACATCATCTGGGGGCTGGCGAAGCTCGGATTCGCTGATTACTTGGAACCACTCTACGATTACCTGGAGAAATATAGGAAGCTGAATGAGCCAGAGCCGAGTACTAGTGCTGTTCCGGTAGGGCTGCGCCACCAGATCAGCGACGGCGACTATCAGAATGGGATTCTTGGGGTTGGAACTGCGGAGGATTTCCACGGCTTGCCGGCTCTCATTTTGCACAAGATTTACTGA 456 0.5395 MAASRGQRGVGGSGERIFSLTTVGNMMKKALPPKARISAEAKETVEQCLTKFVDSVTSEATNNCNNNGHSELTGDDIIWGLAKLGFADYLEPLYDYLEKYRKLNEPEPSTSAVPVGLRHQISDGDYQNGILGVGTAEDFHGLPALILHKIY 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g0493 151 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 21 79 IPR003958 -
Lele35g0493 151 SUPERFAMILY Histone-fold 15 109 IPR009072 GO:0046982
Lele35g0493 151 PRINTS CCAAT-binding transcription factor subunit A signature 45 63 - -
Lele35g0493 151 PRINTS CCAAT-binding transcription factor subunit A signature 64 82 - -
Lele35g0493 151 PRINTS CCAAT-binding transcription factor subunit A signature 83 101 - -
Lele35g0493 151 Gene3D Histone, subunit A 13 116 IPR009072 GO:0046982
Lele35g0493 151 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 106 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g0493 Lele-ChrLele35 3109801 3110256 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g0493 15 112 CCAAT-HAP3 Transcription Factor Family AT4G14540 43.878 2.96e-28 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele35g0493 CBFD_NFYB_HMF 2.2e-11 CL0012