Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g0475 ATGGGGCGTTCTCGTGGGAATTTCCACGCTGATGAGGACCCCAATCAAAGGTCCAGGAGAAAAAAGAATGCTGCTAGTGGAGATATTTCAGAACCTGGATCTGCAGGTCAAGGAACAAGTGAAGGAAAAAAGGCTTTGTACCATTGCAATTACTGTAACAAAGATATTACCGGAAAAATACGTATTAAGTGTGCCATGTGCCCTGATTTTGACTTATGTATAGAGTGCTTTTCTGTTGGAGCTGAGGAGACACCTCATAAAAGCAATCACCCTTACAGGGTTATGGACAATTTATCTTTCCCTCTCATTTGCCCAGATTGGAATGCAGATGATGAAATTCTGCTTCTGGAGGGAATTGAAATGTATGGCTTGGGGAACTGGGCAGAAGTTGCTGAGCATGTTGGGACAAAGAATAAAGAAGCATGCATAGAACACTATAGGAATGTTTACTTGAACTCCAAAACCTTTCCTCTCCCGGACATGTCCCATGTTGTTGGGAAAAACAGAAAGGAGCTGCTTGCTATGGCTAAAGGGCAAGCTGATGACAAAAAAGGTATTACTATGGGGGATCTTGGTATAAAGGAAGAATCTCCATTTTCCCCAGCTAGAGTCAAAGTTGAAGATTCTCATAAAGCTGAATCAGAATCTGGACCCTCTACTGGCTCGCACACTGCAGCGACTGCTAACCGGAGGGCATCTAATGTGGGACGGGGCAAAGGTGGTCCTGGAGTTATCAAAATGGAAGATCCTCAACTAGAAAAGTATTCTGGAGGAAACAAGCCAAGTTCCTTGGGAAATGAAGGTCCTTCTTTAGTGGAGTTGAGTGGTTATAACGCCAAAAGACAGGAATTTGATCCTGAATATGATAATGATGCTGAACAATTACTTGCTGAAATGGAATTTAAGGACACTGACACAGATGACGAACGGGAACTGAAACTACGCGTTCTGCGTATATATTCAAGAAGGCTTGATGAAAGGAAGCGTAGAAAGGATTTCATACTTGAAAGAAATTTGTTATACCCAAATCCTTTTGAGAAGGATTTAACACCTGAAGAGAGGACAATATGTCGAAAATATGATGTATTCATGCGCTTTCATACCAAGGAAGATCATGAGGAATTGCTTAGAGTAGTAATATCTGAGCACAGAGCTTGTAGAAGAATTGAAGAGCTTCAGGACGCCCGAGCTTCTGGTTGCCACACATCAGCCGAAGCAGATAGATATCTTGAACAGAAGAGAAGAAGAGAGGCAGACGAAAGTACTCGTAGGTCAAAAGAAAGAGCTCAAGCTGGTCCAAACAATCATGGGGTTCCAAATGCATTCATGTCTCCAGACTCTGCTGGCAAGGATTCAAGTGCAAGACCAGCAGGGCCTGCTGGTTCAAGCTCTGTCAATGAAATGGATGTGACTGGATATTATGGGGCTGATCTACTTTCTGTACCTGAAAAACGTCTATGCTGTGAGCATAGGTTGCCTCCAGCCATCTTCCTGAAGATGCAAGAGATTCTGTCTGTACAAATACTGAGTGGCAATATCACTGCAAAATCTGATGCCCACCACTTATTCAATATGGATAGTAACAAGATTGATTGCGTATACGACATACTTGTGAAGAAGGGGATTGCTGTGCCCCCCTGA 1641 0.4302 MGRSRGNFHADEDPNQRSRRKKNAASGDISEPGSAGQGTSEGKKALYHCNYCNKDITGKIRIKCAMCPDFDLCIECFSVGAEETPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWAEVAEHVGTKNKEACIEHYRNVYLNSKTFPLPDMSHVVGKNRKELLAMAKGQADDKKGITMGDLGIKEESPFSPARVKVEDSHKAESESGPSTGSHTAATANRRASNVGRGKGGPGVIKMEDPQLEKYSGGNKPSSLGNEGPSLVELSGYNAKRQEFDPEYDNDAEQLLAEMEFKDTDTDDERELKLRVLRIYSRRLDERKRRKDFILERNLLYPNPFEKDLTPEERTICRKYDVFMRFHTKEDHEELLRVVISEHRACRRIEELQDARASGCHTSAEADRYLEQKRRREADESTRRSKERAQAGPNNHGVPNAFMSPDSAGKDSSARPAGPAGSSSVNEMDVTGYYGADLLSVPEKRLCCEHRLPPAIFLKMQEILSVQILSGNITAKSDAHHLFNMDSNKIDCVYDILVKKGIAVPP 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g0475 546 SMART sant 103 152 IPR001005 -
Lele35g0475 546 MobiDBLite consensus disorder prediction 406 430 - -
Lele35g0475 546 MobiDBLite consensus disorder prediction 403 466 - -
Lele35g0475 546 Pfam Zinc finger, ZZ type 45 87 IPR000433 GO:0008270
Lele35g0475 546 Gene3D - 460 543 IPR036388 -
Lele35g0475 546 PIRSF Txn_adaptor_ADA2 34 545 IPR016827 GO:0003713|GO:0006357|GO:0035065
Lele35g0475 546 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 154 IPR017930 -
Lele35g0475 546 FunFam Transcriptional adapter 2 460 544 - -
Lele35g0475 546 CDD ZZ_ADA2 47 95 IPR041983 -
Lele35g0475 546 ProSiteProfiles Myb-like domain profile. 107 150 IPR001005 -
Lele35g0475 546 ProSiteProfiles SWIRM domain profile. 459 546 IPR007526 GO:0005515
Lele35g0475 546 SUPERFAMILY RING/U-box 47 109 - -
Lele35g0475 546 CDD SANT 107 149 IPR001005 -
Lele35g0475 546 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 47 540 - -
Lele35g0475 546 MobiDBLite consensus disorder prediction 178 272 - -
Lele35g0475 546 ProSitePatterns Zinc finger ZZ-type signature. 49 76 IPR000433 GO:0008270
Lele35g0475 546 MobiDBLite consensus disorder prediction 215 231 - -
Lele35g0475 546 MobiDBLite consensus disorder prediction 200 214 - -
Lele35g0475 546 ProSiteProfiles Zinc finger ZZ-type profile. 44 100 IPR000433 GO:0008270
Lele35g0475 546 Pfam Myb-like DNA-binding domain 106 149 IPR001005 -
Lele35g0475 546 Gene3D - 38 95 IPR043145 -
Lele35g0475 546 Gene3D - 101 152 - -
Lele35g0475 546 SUPERFAMILY Homeodomain-like 100 153 IPR009057 -
Lele35g0475 546 FunFam Transcriptional adapter 2 100 152 - -
Lele35g0475 546 FunFam Transcriptional adapter 40 95 - -
Lele35g0475 546 MobiDBLite consensus disorder prediction 1 41 - -
Lele35g0475 546 SUPERFAMILY Homeodomain-like 452 542 IPR009057 -
Lele35g0475 546 SMART zz_5 43 88 IPR000433 GO:0008270
Lele35g0475 546 MobiDBLite consensus disorder prediction 1 26 - -
Lele35g0475 546 ProSiteProfiles SANT domain profile. 102 154 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g0475 Lele-ChrLele35 2994985 2999661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g0475 1 542 EF-hand Containing Proteins AT3G07740 47.090 2.33e-159 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele35g0475 Myb_DNA-binding 2.8e-11 CL0123