Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g0461 ATGGAAAAGCATGTCATAGATGGTAGAGCTGTTGAAGCAAAAAAAGCCGTCCCTAGGGATGATCAGCACATTTCCAACAGAAGCAACAGCAGCATTCATGGATCGCCTGGTCTAACCCGCACAAAGAAGATATTTGTTGGAGGTCTTGCGTCCACAGTTACTGAGAGTGACTTCAAGAAGTACTTTGATCAATTTGGAACAATTACAGATGTAGTTGTGATGTATGACCATAACACTCAAAGACCAAGAGGTTTTGGATTCATCACCTATGATTCTGAGGAAGCAGTGGATAAGGTTCTGTACAAAACATTTCATGAACTGAATGGTAAGATGGTTGAGGTTAAGCGGGCTGTTCCAAAGGAATTATCCCCAGGTCCAAGTAGAGGCCAATTAGCTGGATATAACTATGGTTTAAGTAGAGTTAGTGGCTTTTCTACTGGTTTCATTCAGGGATATAACCCTAGCTTGGTTGGAGGGCATGGATTTAGAGCAGATGGCAGATTTAGTCCTGTTACTGTTGGTCGAAATGGATATCCTCCATTAAGTCCCAGTTATGGGATAGGATTCAATTTTGAACCAGCATTTAGTCAAAATGGAAATTCAAACTTAACTTCTTCCCGTATGTTAGGACGAGCTTTGAACCCTTCATACAATGGAAATTCAAGCAGGTACCATAATGTCATGGGGTATACTGGTACAGGTGCAGGAAACAATTCAGCAAATCAGAATTTGTGGGGAAACGAGAATATTAGCTTTGCTAATAATCCTACAAATTCTGATGGTTTTCATGGGTATGGAAGTCAAAATTCAGGCGTGGGTTCTTTTGGTGATATTGGAACACTGTGGAGTTGCTCCCCTAGTGCAGATCAAGCTGGGACTGTTGGCTCTGGCTATGGCAAGGGCACTCTTAACTATGGCCCTGGAGATGTTAATTTTAGGCCAAAAGCAGTAGGATATGGAAAAGGAAGTGATGCCTTTGCTGAATCAGTGTCATCATATGCCCTATCCAATGGCAATTTTGATGGGGCATATAAAGACCTTTACGAAGGTGGGTCATTTTTTGGTGACCACACCTGGAGATCATCGCCTTCAGAGCTAGAAGATACTGGTTCTCTTGGTTATGACCTTGGAACTGCTGTTTCAGGTTTGATAAGCAAAAGCTCTGGTGGCCACATTGGGGCTTATGCTGTTGCCAATGGACAATCAAATAGAGGAATTGCTGCGTAG 1227 0.4246 MEKHVIDGRAVEAKKAVPRDDQHISNRSNSSIHGSPGLTRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNGKMVEVKRAVPKELSPGPSRGQLAGYNYGLSRVSGFSTGFIQGYNPSLVGGHGFRADGRFSPVTVGRNGYPPLSPSYGIGFNFEPAFSQNGNSNLTSSRMLGRALNPSYNGNSSRYHNVMGYTGTGAGNNSANQNLWGNENISFANNPTNSDGFHGYGSQNSGVGSFGDIGTLWSCSPSADQAGTVGSGYGKGTLNYGPGDVNFRPKAVGYGKGSDAFAESVSSYALSNGNFDGAYKDLYEGGSFFGDHTWRSSPSELEDTGSLGYDLGTAVSGLISKSSGGHIGAYAVANGQSNRGIAA 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g0461 408 FunFam Heterogeneous nuclear ribonucleoprotein 1 39 126 - -
Lele35g0461 408 Gene3D - 39 125 IPR012677 -
Lele35g0461 408 SMART rrm1_1 43 115 IPR000504 GO:0003723
Lele35g0461 408 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 102 IPR000504 GO:0003723
Lele35g0461 408 SUPERFAMILY RNA-binding domain, RBD 40 139 IPR035979 GO:0003676
Lele35g0461 408 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 403 - -
Lele35g0461 408 MobiDBLite consensus disorder prediction 1 22 - -
Lele35g0461 408 CDD RRM2_DAZAP1 40 119 IPR034131 GO:0003723
Lele35g0461 408 MobiDBLite consensus disorder prediction 1 36 - -
Lele35g0461 408 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 119 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g0461 Lele-ChrLele35 2892002 2894512 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g0461 13 121 Eukaryotic Initiation Factors Gene Family AT2G36660 33.036 5.89e-08 52.8