Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g0419 ATGTTGCTAATGATGATTAATTCATATGTCTTATTATCAGCTTGTAATGAGAATACTGATAGGACAGAATCATCTGAAGATGACATGGCTCTCCAGAACGGCGGGATCATGGTCGATCCGCAGGTGGAGGATAAGGAACTGAAGGACCAGCTTCTGAGGAAGTACAGTGGATACTTGGGCAGTCTGAAGCAGGAGTTCATGAAGAAGAGGAAAAAGGGAAAGCTGCCTAAAGAAGCAAGGCAACAATTACTTGATTGGTGGAACGGACACTATAAATGGCCTTATCCTTCTGAATCACAAAAGTTGGCACTTGCAGAATCAACAGGGCTCGATCAGAAGCAAATAAACAACTGGTTCATTAATCAGAGGAAACGTCACTGGAAGCCTTCAGAAGACGTGCAGTTCGTGGTGGTTGATCCAATGCACCCTCATCACTACTTCATGGACAACGTTCTTGGAACTCCATATCCCATGGATTTCTCTCCAACTATGCTCTGA 498 0.4398 MLLMMINSYVLLSACNENTDRTESSEDDMALQNGGIMVDPQVEDKELKDQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWNGHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDVQFVVVDPMHPHHYFMDNVLGTPYPMDFSPTML 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g0419 165 FunFam Homeobox protein knotted-1-like 2 71 133 - -
Lele35g0419 165 ProSitePatterns 'Homeobox' domain signature. 104 127 IPR017970 GO:0000981|GO:0006355
Lele35g0419 165 Pfam ELK domain 46 67 IPR005539 GO:0003677
Lele35g0419 165 ProSiteProfiles ELK domain profile. 46 66 IPR005539 GO:0003677
Lele35g0419 165 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 26 133 - -
Lele35g0419 165 CDD homeodomain 78 130 IPR001356 GO:0003677
Lele35g0419 165 SUPERFAMILY Homeodomain-like 68 145 IPR009057 -
Lele35g0419 165 SMART ELK_2 46 67 IPR005539 GO:0003677
Lele35g0419 165 ProSiteProfiles 'Homeobox' domain profile. 66 129 IPR001356 GO:0003677
Lele35g0419 165 Gene3D - 64 135 - -
Lele35g0419 165 Pfam Homeobox KN domain 86 125 IPR008422 GO:0003677|GO:0006355
Lele35g0419 165 SMART HOX_1 68 133 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g0419 Lele-ChrLele35 2578049 2579233 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g0419 24 165 Homeobox Transcription Factor Family AT1G62360 82.517 4.07e-73 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lele35g0419 Homeobox_KN 3.1e-17 CL0123