Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g0418 ATGGATTACCCACCTCAGAATTTGAACGAATCCCAGATGGATAAACAGACATATGTCTATATGGTGACTTATGCGTTGCAGTCTCGCCTTCGCTCTGCCTTCAGCGCACGCCGCCCGGACGCACAGCTAACCTTTCTACCCTCGCTAGATCATCTCCGACGCTCTCTCACTGTCTCGCCCTCTCTTCCCCAGTGCCGTCGTTCTCAGTATATGGCCGCTTTAATCTCCAGAAGGCTCCAACGTTCTTTTGGTTCCTTGTATTCAATAGGCCATCGTTGTTATTCACCAAATCCTAGTCATCTGTCATTAATTAGATCAAATGATGTATGCAACAGTTTAGCCGGGGAGAGACTGTTTTCTGCGGAGCGTTCCGGCCTTCTCTCTGTCAGGTCATTGATCCGTTCTCATCGGCAGTTTTCAACTTCTGTTTTAACTCCTGGGTCTGGTGATAGTACGTTTCCCTCTGATTTATTGTCTAAAGTGCCAGGGGCTGCTTCTGAGCGTACTATAGGCCTTTGCCAAGATCTTTTGATTCCAGTTACCAATTTTTATAATGAAGACAAGGGCTTAATGGTTTTAGCTGGTGATGTTTTTGACCTTCCAATTAGGAAGGATATTATCCATCGTGTTGTAAGGTGGCAACTTGCAAAACGACAGCAGGGAACGCACTCAACAAAAACTATCAGTGAGGTCAGTGGAACTGGGAGAAAGCCTTGGCGACAAAAGGGAACTGGTAGAGCAAGACATGGATCTTTACGTGGGCCTCAGTTCAGGGGTGGTGCTACCATGCATGGCCCTAAGCCCAGAAGCCATGCCTTCAAGCTCAATAAGAAGGTCCGCCGTTTGGGGCTGAAGATTGCTCTGTCAGCACGTGCAGCAGAAGGAAAGCTTCTTGTATTTGACAATTTGGAGGTTCCCACCCACAAAACCAAGAACATTGTGAACTATGTCAATCAACTGGAAAACACCAAGAAACTTTTGCTCGTAGATGGTGGTCCCATAGAGGAAAAGTTGAATCTGGCTACGCAAAATCTACATTATGTTAACGTACTTCCTTCCATTGGTTTGAATGTCTACAGTATTTTACTGCATGATACATTGGTGATGTCCCGTGATGCTGTTAACAGAATTGTTGAGCGTATGCACACTCCAATAAATCGTTTCTCAAGACCGTACTGTATCGATTCTCGAATCACTGGTAAACTCAGGCGAAGCGTCACACTTACTCGTTCCTCTCATACAACACAGTCCTCAGCTTCAACCTTAGGGTTCCTCTGTTCTTCTTCTCGCCAAAATCTTAGGGCTTACAATTCATACATTTCCAATCTTATGGCGAAAACTAGACCGGGCAGAAAGGACTTGGACTCATATACCATCAGAGGTACAAACAAGGTCGTCAGAGCTGGAGACTGTGTACTGATGCGACCTTCCGACACCAGCAAGCCTCCGTACGTGGCTCGCGTGGAGAAGATCGAACAGGATAATAGGAACAACGTTAAAGTCCGTGTGAGATGGTATTATCGGCCGGAAGAGTCGATTGGAGGACGCAGGCAATTCCATGGAGCGAAAGAGCTGTTCTTGTCGGACCATTATGACATCCAGAGTGCTCACACCATTGAAGGGAAGTGTATTGTACACTCTTTCAAGAACTACACTAAGCTTGAGAATGTAGGAGCTGAAGATTACTACTGTAGATTTGAATACAAGGCTGCTACCGGGGCTTTCACGCCAGACCGTGTTGCTGTGTATTGCAAATGCGAGATGCCTTATAACCCGGACGACCTCATGGTGCAATGTGAGGGGTGCAAGGATTGGTATCATCCTGCTTGTGTGGGCATGACTATCGAAGAAGCAAAAAAGCTGGACCATTTTGTATGTTCTGAATGTTCTTCTGATGATGATATGAAAAAACCGCAAACTACATTTTCTGCATCACCAGCATCCGATGGCAAGGTGGAGCCCAAGCGGCGGAAGAGATGA 1980 0.4626 MDYPPQNLNESQMDKQTYVYMVTYALQSRLRSAFSARRPDAQLTFLPSLDHLRRSLTVSPSLPQCRRSQYMAALISRRLQRSFGSLYSIGHRCYSPNPSHLSLIRSNDVCNSLAGERLFSAERSGLLSVRSLIRSHRQFSTSVLTPGSGDSTFPSDLLSKVPGAASERTIGLCQDLLIPVTNFYNEDKGLMVLAGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWRQKGTGRARHGSLRGPQFRGGATMHGPKPRSHAFKLNKKVRRLGLKIALSARAAEGKLLVFDNLEVPTHKTKNIVNYVNQLENTKKLLLVDGGPIEEKLNLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVNRIVERMHTPINRFSRPYCIDSRITGKLRRSVTLTRSSHTTQSSASTLGFLCSSSRQNLRAYNSYISNLMAKTRPGRKDLDSYTIRGTNKVVRAGDCVLMRPSDTSKPPYVARVEKIEQDNRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDIQSAHTIEGKCIVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCSECSSDDDMKKPQTTFSASPASDGKVEPKRRKR 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g0418 659 SMART PHD_3 583 630 IPR001965 -
Lele35g0418 659 MobiDBLite consensus disorder prediction 629 659 - -
Lele35g0418 659 FunFam Bromo-adjacent homology (BAH) domain-containing protein 576 647 - -
Lele35g0418 659 Pfam PHD-finger 583 631 IPR019787 -
Lele35g0418 659 SUPERFAMILY FYVE/PHD zinc finger 575 633 IPR011011 -
Lele35g0418 659 ProSiteProfiles BAH domain profile. 464 579 IPR001025 GO:0003682
Lele35g0418 659 Pfam BAH domain 466 578 IPR001025 GO:0003682
Lele35g0418 659 PANTHER OS08G0421900 PROTEIN 444 651 - -
Lele35g0418 659 Hamap 50S ribosomal protein L4 [rplD]. 185 382 IPR013005 -
Lele35g0418 659 ProSitePatterns Zinc finger PHD-type signature. 584 629 IPR019786 -
Lele35g0418 659 MobiDBLite consensus disorder prediction 224 270 - -
Lele35g0418 659 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 576 645 IPR013083 -
Lele35g0418 659 ProSiteProfiles Zinc finger PHD-type profile. 581 632 IPR019787 -
Lele35g0418 659 FunFam Chromatin remodeling protein EBS 438 575 - -
Lele35g0418 659 Gene3D - 168 395 IPR023574 GO:0003735|GO:0005840|GO:0006412
Lele35g0418 659 TIGRFAM rplD_bact: 50S ribosomal protein uL4 193 378 IPR013005 -
Lele35g0418 659 FunFam 50S ribosomal protein L4 159 387 - -
Lele35g0418 659 Pfam Ribosomal protein L4/L1 family 193 379 IPR002136 GO:0003735|GO:0005840|GO:0006412
Lele35g0418 659 CDD BAH_BAHCC1 465 599 - -
Lele35g0418 659 Gene3D - 425 575 IPR043151 -
Lele35g0418 659 SUPERFAMILY Ribosomal protein L4 178 381 IPR023574 GO:0003735|GO:0005840|GO:0006412
Lele35g0418 659 SMART BAH_4 464 579 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g0418 Lele-ChrLele35 2565463 2574991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g0418 484 581 Core DNA Replication Machinery Family AT4G14700 31.313 7.36e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele35g0418 Ribosomal_L4 2.6e-66 No_clan