Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g0414 ATGGAAGTGTTTTGCTCAAACGTTTTTGAAGTTTCAACGAGGAGAAAGGTTCGAGAGAGTCATAAGTATACTCCAACCTCTGAAGATGAAGGAGACATTCTATGCTCCTCAAAGAGGAGGCCTAGTTTTCCATGCGAGAGAGGGGATCAACCAAAGAAATCTATTGCTTCCTCGAAAAGGAAAAGAAATCCGCAAAATGATTTTTTGGTTGATGATTTGGAAGCTGATGAGGAAACCGTGGTTGCCAAGATAAGGTCCAGGAGAAGAGCCCGTCCAGGAGAAGGCTCAGAATCAAGTGGAGAGAGTCCATCCTCGAGCATTACCTCATCGCATTCTGCACCAGCGTCCACATTGCCTACTTCGGATTCAAGAAACTATACTAAGGACGATCACATTGCAACAAGTAGAAGGGATACTAAACGAAGGTACTGGATATGTCATCAGTGCATGAAAAGGGATAGATTAAGTTTTGTCCCTTGCACTAAATGCGAACAAAAAATGTACTGTGATAAGTGCATCAAGCAATGGTATCCTGATATGACAGTAGCAGAAATTGCGGAGTGTTGCCCATTTTGCCGTAAAACTTGCAACTGCAATGCCTGCTTGCGCGCAAGTGGGATGATTAAGACATCTATCAGGGATATCTCTGATAATGAGAAGTGTCAGTGTCTGCACTATTGTATCAACTTAGTTCGTCCATTTCTGAAACAAATTTGTGAAGAAGAAGCTCTAGAGGAAGAGATTGAAGCTAGAATACAAGGGACATCACGTTCTGAGATTAAGATACTGCAAACTCCATGTGGCGATGATGAACGTGTCTATTGCAATCATTGTGCTACTTCAATTGTTGACCTTCACCGAAGCTGTCCTGAGTGTTCCTATGAACTCTGCCTCCAATGTTGCCAAGAAGTTCGCAATGGAACTATTTTGCCTCGAGCTGAAATGAGGTTTCTTTATGTGAATAAGGGTTATGATTACATGCATGGTGGTGATCCCGTGCTGGAGTCTTTTGATTCCAAGACCTCAGATGATCCTTCTATTGAGCAATCTATTGAGTGGACTGCAGAAAGCAATGGAAGTGTTTTTTGTGCCCCTAAGGAGTTTGGGGGATGTGGAAACTGCATGTTGGAGCTCAAGCATATTCTTCCACGGGGCTGGATATCTGAACTGGAAGCTAAAGCTGGTGATTTGTTGAGATACTGCGTAACTGGACAAATTCTTCTGAAGCACAAAGCAGCAGCAGCATCAAGCTGCAACTACTCTGTGAGAAGAGCTGCTTCTAGAGAAGGCAGTTATGACAATGACATATACTGCCCTTCTTCGAGGGAGATCGTAAATGAGGGGTTATCAATATTTCAAAAGCATTGGATTAGTGGTGAACCTGTTATAGTTCGTGATGTTCTTCAACAAGCAACAGGTTTGAGCTGGGAGCCCATGGTTATTTGGAGGGCAGTATGTGCGGCTTCAGATTCAAAAATCAACCCCAAAATGTCAGAAGTTAAGACTATTGATTGTCTCGCTGGTTGTGAGGTTGAAATCAGCACTCATAAGTTCTTTAAAGGTTATATGGAGGGAAGAACATATAGAAATCTCTGGCCAGAGATGCTAAAGCTAAAAGACTGGCCTCCCTCTGATAAGTTTGAAGATCTTTTGCCTCGTCACTGTGATGAGTTTATCCGGTCCTTGCCGTTCCAAGAATACACTGATCCTCGGGCTGGAATCCTCAATCTTGCTGTCAAGTTGCCAATGCATGTCTTGAAACCTGACATGGGTCCAAAAACATACATTGCTTATGGAATAAAAGAAGAACTTGGCAGAGGAGATTCTGTAACAAAGCTTCATTGTGACATGTCAGATGCGGTGAATATTTTGACCCATACAGCAGAAGTAAAGTTAAATGATGAGCAAAGCTTGACTATTACAAGGTTGAAAATAGCACATAAGGTCCAAGATGAAAAAGAGAAGTGCTGTGCTGAAATCAATGGAGATATCTCTCCAAATGATGTGCCTAAAGGGGTCACATTTTTTGACGTCCCTGCAGAAAATGAGACAAGAGAAGCAGGTGCTGCTCTTTGGGACATTTTCAGAAGAGAAGATACGGAGAAGTTAGAAAAATATTTAATAAAACACTCAAGAGAGTTCAGACATACTTTTTGTTCTCCTGTGGAACAGGTTTTCCATCCCATTCATGATCAATGTTTTTATTTAACAATGGAGCACAAGAAGAAGCTGAAGGAGGAGTTCGGTATTGAACCATGGACATTTGAGCAGAATCTTGGGGAGTCTGTGTTTATTCCTGCTGGATGCCCTCATCAAGTCAGAAATCTCATGTCATGCACAAAAGTTGCTGTGGACTTCGTGTCACCAGAAAACCTCGATGAGTGTCTGCGTTTAACTAACCAGTTCCGGCAGCTTCCCAAGAACCACAGGGCCAGAGAAGATAAACTGGAGATAAAGAAGATGATAGTGTATGCTGCTGACCAAATCCTCAGAGATTTTGAATCCTTGCTCAACCGTACTTGA 2523 0.4237 MEVFCSNVFEVSTRRKVRESHKYTPTSEDEGDILCSSKRRPSFPCERGDQPKKSIASSKRKRNPQNDFLVDDLEADEETVVAKIRSRRRARPGEGSESSGESPSSSITSSHSAPASTLPTSDSRNYTKDDHIATSRRDTKRRYWICHQCMKRDRLSFVPCTKCEQKMYCDKCIKQWYPDMTVAEIAECCPFCRKTCNCNACLRASGMIKTSIRDISDNEKCQCLHYCINLVRPFLKQICEEEALEEEIEARIQGTSRSEIKILQTPCGDDERVYCNHCATSIVDLHRSCPECSYELCLQCCQEVRNGTILPRAEMRFLYVNKGYDYMHGGDPVLESFDSKTSDDPSIEQSIEWTAESNGSVFCAPKEFGGCGNCMLELKHILPRGWISELEAKAGDLLRYCVTGQILLKHKAAAASSCNYSVRRAASREGSYDNDIYCPSSREIVNEGLSIFQKHWISGEPVIVRDVLQQATGLSWEPMVIWRAVCAASDSKINPKMSEVKTIDCLAGCEVEISTHKFFKGYMEGRTYRNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRSLPFQEYTDPRAGILNLAVKLPMHVLKPDMGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILTHTAEVKLNDEQSLTITRLKIAHKVQDEKEKCCAEINGDISPNDVPKGVTFFDVPAENETREAGAALWDIFRREDTEKLEKYLIKHSREFRHTFCSPVEQVFHPIHDQCFYLTMEHKKKLKEEFGIEPWTFEQNLGESVFIPAGCPHQVRNLMSCTKVAVDFVSPENLDECLRLTNQFRQLPKNHRAREDKLEIKKMIVYAADQILRDFESLLNRT 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g0414 840 FunFam Transcription factor jumonji domain-containing protein 433 812 - -
Lele35g0414 840 ProSiteProfiles JmjC domain profile. 570 803 IPR003347 -
Lele35g0414 840 SUPERFAMILY Clavaminate synthase-like 449 823 - -
Lele35g0414 840 ProSiteProfiles Zinc finger RING-type profile. 146 193 IPR001841 -
Lele35g0414 840 Pfam JmjC domain, hydroxylase 683 786 IPR003347 -
Lele35g0414 840 MobiDBLite consensus disorder prediction 76 95 - -
Lele35g0414 840 MobiDBLite consensus disorder prediction 97 123 - -
Lele35g0414 840 Gene3D Cupin 438 812 - -
Lele35g0414 840 SMART cupin_9 551 803 IPR003347 -
Lele35g0414 840 CDD cupin_RmlC-like 726 775 - -
Lele35g0414 840 MobiDBLite consensus disorder prediction 15 132 - -
Lele35g0414 840 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 53 837 IPR045109 GO:0032454|GO:0033169
Lele35g0414 840 MobiDBLite consensus disorder prediction 15 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g0414 Lele-ChrLele35 2533057 2545018 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lele35g0414 JmjC 4.2e-14 CL0029