Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g0407 ATGGCCACCTTAACCCCAAGAATCCTGCTCCTTTCATGCCTTCTTCTTCCATACTTGAGCACAACCTCGTACGCAGATTCCCCATGCAGTTACCTCAGTACTCCCGAGCTCATCAATTCAAGCTATATTCCCGAAATTCCTAAGAACCTTATCCTCAATGCCATAGACTCTTGCTGGAGATCCAACTCAAACTGGGCATCAAATCGGCAAGCCCTAGCTGATTGTGCCGTTGGCTTTGGCAAAGATGCCATTGGAGGTAAGTTTGGGGCTATATATGAGGTCACTGATAAGTCCGATGACCCTGTCAACCCTAAACCAGGCACACTTCGTTATGGTGTGATCCAAACACGGCCTCTTTGGATAATATTCGCTAAGGACATGGTTATTAGTCTGAACAACGAGCTTGTAGTTAATAGCTATAAGACCATTGATGGCAGAGGAGCCAAAGTGGAGATTGCTTATGGACCTTGCATTACCATTCAAGCTGTTAATCACGTCATTATACATGGCATTAGCATCCACGATTGTAAACCAGGAAAAGCAGGGATGGTGAGGAGCAGTGAAGAGCATGTGGGGCATAGGGGAGGGTCAGATGGAGATGGAATTAGCATATTTGGTTCGTCGAATATTTGGATAGATCATTGCTTCTTGTCTCGTTGTACGGATGGCCTTATTGATGTTATTCATGCCTCAACTTCTGTCACTATCTCTAACAATTACTTCACCCACCATGACAAAGTAATGCTGTTAGGGCACAACGATGAATATACAGCGGATAGAATAATGAAAGTGACAGTGGCCTTCAATCGCTTTGCAAGCGACCTCATTGAGAGAATGCCAAGAGAGGGAAATGGCAGGGTGAGATTTGGGTATGCGCATGTTGTGAACAACCAATATGAAGAGTGGATTCAGTACGCCATTGGAGGCAGTGCCGACCCTACCATTTTAAGTGAAGCCAATTACTTCATCGCTCCAAATAACGCTGATGCAAAACAGGTTACGAAGAGGGAAACAAGTGATAAAAGCTGGAGTAAGTGGAAATGGAGGACATACAAGGATAAATTCATGAATGGAGCATACTTTGTTCCATCAGGCTATGGGAGTTGTGCTCCTTATTATTCTGCTTCACAATCTTTTGTCGCTGCTTCTGCCTTCTTGGTCCCTCACTTAACTCTCCATGCTGGTCCTCTTCCCTGTGTTCTTGGCAAAGCTTGAGAATTTATTCGAATTTGTAAGTATGGAGCTATATATGAGGTCACTGATGCCTCCGATGACCCTGTCAACCCTAAACCAGGCACACTTCGTTATGGTGTGATCCAAACACGGCCTCTTTGGATAATATTCGCCACGGACATGATTATTAGTCTGAAGAACGAGCTTATAGTGAATAGCTATAAGACCATTGATGGTAGAGGAGCCAAAGTGCAGTTTGCTTGTGGACCTTGCATTACCATTCAAGCTGTTAATCACGTCATTATACATGGCAATAGCATCCACGATTGTAAACCAGGAAAAGCTGGGGTGGTGAAAAGCAGCAGTGATCATGTAGGACTTCGTCTAGGTTCAGATGGAGATGCCATTAGCATATTTGGTTCTTTAAATGTTTGGGTGATGCTGGTGAGATTTGGGTACGCGCATGTGGTCAACAACAGATATGATGGCTGGAAGATGTATGCCATTGGTGGCAGTGCAGAGCCAACCATCCTGATTGAAGGGAACTACTATATAGCTCCAAGTAACCTCAATGGGAAGCAGGTTACCAAGAGGATAGTGAAGAAAGAGTGGAAGAATTGGAAATGGAGGACATACAAGGATGCATTTGTGAATGGAGCCTTTTTTGTGCCATCTGGTTATGGAAGTTGTGCCCCTTATTATTCAAGTGCTCAGTCTTTTGTTGCTGCTTCAGCATCCATGGTGCCTGCATTAACCCTTCATGCTGGTCCTCTCACTTGTATTCTTGGGAAAGCTTGTTAA 1974 0.4433 MATLTPRILLLSCLLLPYLSTTSYADSPCSYLSTPELINSSYIPEIPKNLILNAIDSCWRSNSNWASNRQALADCAVGFGKDAIGGKFGAIYEVTDKSDDPVNPKPGTLRYGVIQTRPLWIIFAKDMVISLNNELVVNSYKTIDGRGAKVEIAYGPCITIQAVNHVIIHGISIHDCKPGKAGMVRSSEEHVGHRGGSDGDGISIFGSSNIWIDHCFLSRCTDGLIDVIHASTSVTISNNYFTHHDKVMLLGHNDEYTADRIMKVTVAFNRFASDLIERMPREGNGRVRFGYAHVVNNQYEEWIQYAIGGSADPTILSEANYFIAPNNADAKQVTKRETSDKSWSKWKWRTYKDKFMNGAYFVPSGYGSCAPYYSASQSFVAASAFLVPHLTLHAGPLPCVLGKAXEFIRICKYGAIYEVTDASDDPVNPKPGTLRYGVIQTRPLWIIFATDMIISLKNELIVNSYKTIDGRGAKVQFACGPCITIQAVNHVIIHGNSIHDCKPGKAGVVKSSSDHVGLRLGSDGDAISIFGSLNVWVMLVRFGYAHVVNNRYDGWKMYAIGGSAEPTILIEGNYYIAPSNLNGKQVTKRIVKKEWKNWKWRTYKDAFVNGAFFVPSGYGSCAPYYSSAQSFVAASASMVPALTLHAGPLTCILGKAC 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g0407 657 SMART amb_all 451 581 IPR002022 -
Lele35g0407 657 SMART amb_all 126 328 IPR002022 -
Lele35g0407 657 SUPERFAMILY Pectin lyase-like 414 656 IPR011050 -
Lele35g0407 657 Pfam Pectate lyase 134 322 IPR002022 -
Lele35g0407 657 Gene3D - 52 398 IPR012334 -
Lele35g0407 657 Gene3D - 411 537 IPR012334 -
Lele35g0407 657 Gene3D - 538 650 IPR012334 -
Lele35g0407 657 PRINTS Pollen allergen Amb family signature 134 150 IPR018082 -
Lele35g0407 657 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Lele35g0407 657 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Lele35g0407 657 PRINTS Pollen allergen Amb family signature 346 370 IPR018082 -
Lele35g0407 657 PRINTS Pollen allergen Amb family signature 75 92 IPR018082 -
Lele35g0407 657 PRINTS Pollen allergen Amb family signature 98 123 IPR018082 -
Lele35g0407 657 PRINTS Pollen allergen Amb family signature 376 399 IPR018082 -
Lele35g0407 657 PRINTS Pollen allergen Amb family signature 198 219 IPR018082 -
Lele35g0407 657 SUPERFAMILY Pectin lyase-like 53 396 IPR011050 -
Lele35g0407 657 PANTHER PECTATE LYASE 18-RELATED 51 402 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g0407 Lele-ChrLele35 2490185 2495433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g0407 412 657 Polysaccharide Lyase AT1G11920 42.357 2.26e-65 218