Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g0379 ATGCAGCCTGGTCCTGGCATGGCTCCCCCAACCATGGGCCAACAGCCTCCCCAGCAGTACCCGCAGCAGCAACATCCCTACATGATGATGCCTCCGCAGGCTCAGGCGCCGCCGATGTGGGAACCCTCTGTTCAACCACCGCCCCAGTCGATCGCTCCACCGCAGACGAGTCAAGCCGCCCAACCCACAAGCGCCGACGAGGTCCGTACTCTTTGGATCGGTGATTTGCAGTTCTGGATGGACGAGAACTATTTGTACAGTTGTTTTGCTCATACGGGCGAGGTGGCCTCGGTGAAAGTTATTCGAAACAAGCAAACTAATCAATCTGAAGGTTATGGGTTTATTGAGTTTTTCACACGCGCAGCCGCTGAGAGAATACTTCAAACATTTAATGGAACCATTATGCCAAATGGTGGGCAAACCTTCAGATTGAACTGGGCATCTTTTGGTTCTGGTGAGAAGCGGGGCGATGATACTCCAGATTATACAATATTCGTTGGAGATTTAGCTGCAGATGTTGCAGATTACTTGCTGCAGGAGACGTTTCGGGCTAGATATCCCTCAGTTAAAGGTGCAAAAGTTGTGATCGATAGACTCACTGGGAGGACAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGAAAATGAACAGATGCGAGCTATGACTGAGATGCAAGGTGTATTATGTTCAACGAGACCCATGCGCATTGGACCAGCCACTAACAAAAACCTTGGCACTCAGCCTAAAGCTTCATATCAGAATCCTCAAGGGGCGCAGAACGAGAATGATCCAAATAATTCAACTATTTTTGTCGGGAATTTGGATCCTAATGTAGCGGACGATCATCTTAGGCAAGTTTTTGGCCAATATGGTGAGTTAGTACATGTCAAGATTCCAGCAGGCAAGCGTTGTGGGTTTGTTCAATTTGCCGACAGGAGCTGCGCAGAAGAGGCACTGAGGGTGTTAAATGGAACACCGTTGGGTGGGCAGAATGTTCGTCTCTCTTGGGGCCGGAGTCCTTCAAACAAACAGACTCAGGCAGATCCAAACCAGTGGAATGGTGGTGGTGCTGGGTATTACGGATATGCACAGGGGTATGAGAACTATGGATATGCTCCAGCTGCTGCTGCACAGGATCCCAACATGTATGGAAGCTATCCAGGCTACACCAATTACCAACCACCACAGCAACAGCAGCATAATGGATATACTTGA 1215 0.4914 MQPGPGMAPPTMGQQPPQQYPQQQHPYMMMPPQAQAPPMWEPSVQPPPQSIAPPQTSQAAQPTSADEVRTLWIGDLQFWMDENYLYSCFAHTGEVASVKVIRNKQTNQSEGYGFIEFFTRAAAERILQTFNGTIMPNGGQTFRLNWASFGSGEKRGDDTPDYTIFVGDLAADVADYLLQETFRARYPSVKGAKVVIDRLTGRTKGYGFVRFGDENEQMRAMTEMQGVLCSTRPMRIGPATNKNLGTQPKASYQNPQGAQNENDPNNSTIFVGNLDPNVADDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTPLGGQNVRLSWGRSPSNKQTQADPNQWNGGGAGYYGYAQGYENYGYAPAAAAQDPNMYGSYPGYTNYQPPQQQQHNGYT 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g0379 404 MobiDBLite consensus disorder prediction 384 404 - -
Lele35g0379 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 267 339 IPR000504 GO:0003723
Lele35g0379 404 CDD RRM1_SECp43_like 70 150 - -
Lele35g0379 404 Gene3D - 243 348 IPR012677 -
Lele35g0379 404 FunFam Polyadenylate-binding protein RBP45C 154 245 - -
Lele35g0379 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 241 IPR000504 GO:0003723
Lele35g0379 404 MobiDBLite consensus disorder prediction 1 64 - -
Lele35g0379 404 MobiDBLite consensus disorder prediction 383 404 - -
Lele35g0379 404 FunFam Polyadenylate-binding protein RBP45 9 153 - -
Lele35g0379 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 149 IPR000504 GO:0003723
Lele35g0379 404 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 60 343 - -
Lele35g0379 404 MobiDBLite consensus disorder prediction 236 268 - -
Lele35g0379 404 MobiDBLite consensus disorder prediction 31 53 - -
Lele35g0379 404 SUPERFAMILY RNA-binding domain, RBD 155 252 IPR035979 GO:0003676
Lele35g0379 404 FunFam Polyadenylate-binding protein RBP45C 246 373 - -
Lele35g0379 404 Gene3D - 9 159 IPR012677 -
Lele35g0379 404 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 269 332 IPR000504 GO:0003723
Lele35g0379 404 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 227 IPR000504 GO:0003723
Lele35g0379 404 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 136 IPR000504 GO:0003723
Lele35g0379 404 MobiDBLite consensus disorder prediction 235 268 - -
Lele35g0379 404 CDD RRM3_NGR1_NAM8_like 266 337 - -
Lele35g0379 404 SUPERFAMILY RNA-binding domain, RBD 251 366 IPR035979 GO:0003676
Lele35g0379 404 CDD RRM2_SECp43_like 161 240 - -
Lele35g0379 404 SMART rrm1_1 70 145 IPR000504 GO:0003723
Lele35g0379 404 SMART rrm1_1 163 237 IPR000504 GO:0003723
Lele35g0379 404 SMART rrm1_1 268 335 IPR000504 GO:0003723
Lele35g0379 404 MobiDBLite consensus disorder prediction 1 16 - -
Lele35g0379 404 SUPERFAMILY RNA-binding domain, RBD 50 147 IPR035979 GO:0003676
Lele35g0379 404 Gene3D - 161 237 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g0379 Lele-ChrLele35 2292748 2296186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g0379 266 347 Eukaryotic Initiation Factors Gene Family AT4G34110 34.831 2.44e-07 50.8