Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g0349 ATGAAAAGCCCACTTGGAATAAACAAAGAGCTTTGGACGGCCAGCGACAGTGACGGTGGGCCCAGTGACTCTAAAATATCTCTGAAATCAATGGATAAAGGAAATGAATGGATGGATTCCAAAGTTGGACGTCTCGTTTGGTTCCAAACGTTGCCGTGTCTATGTAGTCTAACGCCATCTCAATTCCCCAATCTTCCGCTTTTCTTCGCAAGCAGTTTTATTTCACGTTCCAGAGAAAACCCTAGCAAATCAAAACTCTCCAAGATGCAAATCTTCGTCAAGACCCTTACCGGCAAGACCATCACTCTCGAAGTCGAGAGTTCAGATACCATAGACAATGTTAAGGCAAAGATTCAAGACAAGGAAGGGATCCCACCGGACCAGCAGCGACTGATTTTTGCGGGTAAGCAGCTTGAGGACGGACGTACCCTTGCCGACTATAACATCCAGAAGGAATCGACTCTCCACCTCGTGCTCCGTTTACGTGGTGGTATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGAGTTCTGACACCATCGACAATGTCAAGGCTAAGATCCAAGACAAGGAGGGCATCCCACCAGACCAACAGAGGCTGATCTTCGCCGGAAAGCAACTGGAAGATGGTCGTACCTTAGCTGACTACAACATCCAAAAGGAATCCACCCTCCACCTTGTCCTCCGACTCCGTGGAGGCATGCAAATCTTTGTTAAGACCCTCACTGGCAAAACGATCACCCTTGAGGTGGAGAGCTCCGACACCATTGACAACGTGAAGGCCAAGATCCAAGATAAGGAAGGCATCCCTCCAGACCAGCAAAGGCTAATCTTTGCCGGGAAACAGCTTGAGGATGGCCGTACCCTGGCCGATTATAACATCCAGAAAGAGTCCACCCTCCACCTTGTGCTTCGTCTCCGTGGAGGAATGCAAATCTTTGTCAAGACACTGACCGGTAAGACAATTACCCTAGAGGTGGAGAGTTCTGACACTATTGATAACGTCAAGGCTAAGATCCAAGATAAGGAAGGAATCCCCCCTGACCAGCAGAGGTTGATCTTCGCTGGAAAGCAGCTGGAAGATGGACGTACATTGGCTGACTATAACATTCAGAAGGAGTCCACACTTCACCTTGTGCTTCGTCTCAGGGGAGGTATGCAGATCTTTGTGAAGACCTTGACAGGCAAAACCATCACCCTGGAGGTTGAGAGTTCGGATACAATTGACAATGTGAAGGCAAAAATCCAGGACAAGGAAGGGATCCCACCGGACCAGCAAAGGTTGATCTTTGCAGGGAAGCAGTTGGAGGATGGAAGGACCCTTGCTGACTACAACATCCAGAAGGAGTCCACCCTTCACCTCGTCCTCCGTCTTCGTGGAGGATTCTAA 1410 0.4936 MKSPLGINKELWTASDSDGGPSDSKISLKSMDKGNEWMDSKVGRLVWFQTLPCLCSLTPSQFPNLPLFFASSFISRSRENPSKSKLSKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g0349 469 Gene3D - 241 316 - -
Lele35g0349 469 Gene3D - 82 164 - -
Lele35g0349 469 Gene3D - 317 392 - -
Lele35g0349 469 Gene3D - 393 469 - -
Lele35g0349 469 Gene3D - 165 240 - -
Lele35g0349 469 SMART ubq_7 241 312 IPR000626 GO:0005515
Lele35g0349 469 SMART ubq_7 317 388 IPR000626 GO:0005515
Lele35g0349 469 SMART ubq_7 393 464 IPR000626 GO:0005515
Lele35g0349 469 SMART ubq_7 89 160 IPR000626 GO:0005515
Lele35g0349 469 SMART ubq_7 165 236 IPR000626 GO:0005515
Lele35g0349 469 ProSitePatterns Ubiquitin domain signature. 419 444 IPR019954 -
Lele35g0349 469 PANTHER UBIQUITIN 241 318 - -
Lele35g0349 469 CDD Ubl_ubiquitin 393 468 - -
Lele35g0349 469 FunFam Polyubiquitin 3 393 468 - -
Lele35g0349 469 ProSitePatterns Ubiquitin domain signature. 191 216 IPR019954 -
Lele35g0349 469 SUPERFAMILY Ubiquitin-like 392 468 IPR029071 -
Lele35g0349 469 CDD Ubl_ubiquitin 165 240 - -
Lele35g0349 469 ProSitePatterns Ubiquitin domain signature. 267 292 IPR019954 -
Lele35g0349 469 FunFam Polyubiquitin 3 317 392 - -
Lele35g0349 469 SUPERFAMILY Ubiquitin-like 164 240 IPR029071 -
Lele35g0349 469 CDD Ubl_ubiquitin 317 392 - -
Lele35g0349 469 FunFam Polyubiquitin 3 89 164 - -
Lele35g0349 469 PRINTS Ubiquitin signature 141 162 IPR019956 -
Lele35g0349 469 PRINTS Ubiquitin signature 120 140 IPR019956 -
Lele35g0349 469 PRINTS Ubiquitin signature 99 119 IPR019956 -
Lele35g0349 469 FunFam Polyubiquitin 3 241 316 - -
Lele35g0349 469 ProSitePatterns Ubiquitin domain signature. 115 140 IPR019954 -
Lele35g0349 469 SUPERFAMILY Ubiquitin-like 87 164 IPR029071 -
Lele35g0349 469 FunFam Polyubiquitin 3 165 240 - -
Lele35g0349 469 CDD Ubl_ubiquitin 89 164 - -
Lele35g0349 469 ProSiteProfiles Ubiquitin domain profile. 89 164 IPR000626 GO:0005515
Lele35g0349 469 Pfam Ubiquitin family 167 238 IPR000626 GO:0005515
Lele35g0349 469 Pfam Ubiquitin family 395 466 IPR000626 GO:0005515
Lele35g0349 469 Pfam Ubiquitin family 243 314 IPR000626 GO:0005515
Lele35g0349 469 Pfam Ubiquitin family 91 162 IPR000626 GO:0005515
Lele35g0349 469 Pfam Ubiquitin family 319 390 IPR000626 GO:0005515
Lele35g0349 469 ProSiteProfiles Ubiquitin domain profile. 165 240 IPR000626 GO:0005515
Lele35g0349 469 ProSiteProfiles Ubiquitin domain profile. 241 316 IPR000626 GO:0005515
Lele35g0349 469 SUPERFAMILY Ubiquitin-like 240 316 IPR029071 -
Lele35g0349 469 ProSiteProfiles Ubiquitin domain profile. 317 392 IPR000626 GO:0005515
Lele35g0349 469 ProSiteProfiles Ubiquitin domain profile. 393 468 IPR000626 GO:0005515
Lele35g0349 469 SUPERFAMILY Ubiquitin-like 316 392 IPR029071 -
Lele35g0349 469 CDD Ubl_ubiquitin 241 316 - -
Lele35g0349 469 ProSitePatterns Ubiquitin domain signature. 343 368 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g0349 Lele-ChrLele35 2111525 2113715 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g0349 393 469 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 9.96e-47 156