LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele35g0322	ATGGCAACTTCCAAATTCTACGCACTTACTTATCCTCTCTTGGTGTTCCTAACCATCTTCTTCATCACAAGCAAAGCTTCTTTTCATTACACAGCTCATTACTGCTCAAACGCCACCATCTTCCCCACCAATACCACATTCAAACGAAATCTCAACGTCCTCCTCTCCTCCCTCACCTCCAACGCCACCCAGTTCGGCGGCTACTACATGACCATCATGGGCTTCGGAACCACAGACGCCGTCAACGGCCTCTTCCTCTGCCGTGGGGACATCATCTCCCCCATCGCCTGCGAAGACTGCGTCACCGCTGCAGCCAAAGACATAACTACCCGTTGCCCTAACCGAACCGAGGCCATAATCTGGTACGACCAGTGCATGCTGCGTTACACCGGCAAGTATTTCCGGTACGACAGCGTCAGCCCCGGGGTAAACCTCCACGACGGCAAGAGCTTCTCCGGCATGGACTTGGGACGGTTCAACGTCTCGTTATTCAACTTATTGAATTATTTGACATCGAAGGCTGCGAAACCACCGACGGTGAAGAAGTTTGCAGTCGGCCAAGCGATATTGTCAACCTCGCCAGTGACCACGGTGTATGCTTTAGAGCAGTGCACCGATGACTTGACCAGTGATCAGTGTGAGACATGTCTGCGAAACGCCATTGGAATGTTTGCTAATTGCTGTGAAGGAAAACAAGGCGCGAGGTTTCTTCTTGCTTCGTGCAACATCAGATACGAACTGTATCCCTTTTACAATGTAACGGCTGTATCATCTGGGCCCGCAGTAACATTATCTACTCCTTCAGGAAAGGAGAAAACTGAAACGCGAACGATTGTTGTAATTGTTGTGCCAGTTTCAGTTGCTGTTATGATCTTCTGTCTTGGAGGGTTTTTCCTGCTGAAAACAAAGAAGAAGCATAAGAATGTCGCATTTAATGAAAGTCATGGAGAAGAAATTACCCCTCTAGAGTCTTTGCAATTCTCTTTTGCTACCATTGAAGCTGCGACAAACAATTTTTCACAGCTTAACAAAATAGGCAGAGGTGGATTTGGGGAAGTCTACAAGGGTGTGCTTCCAGATAAACGAGAAATAGCTGTTAAGAAACTCTCAAGTAAATCTAAGCAGGGTGTGGTGGAATTTAAGAATGAAATTTCACTTATTGCCAAGCTTCAGCATAGAAATCTGGTTGCCTTATTTGGATTTTGCTTGCAAGAAGAGGAGAAGATGCTCATTTATGAATATGTGCCTAACAAGAGTCTTGATTACTTTTTATTTGATTCTAATCCAAGTCGAAGGAAATTGAATTGGTCTGAACGTTATAAGATCATAGGAGATGTATATAGTTTTGGAGTTATAATTCTAGAAATAATTAGTGCAAAAAGAAATGCTCTGTCCCCCAAGTCAAAGATTTTTGAAGATCTTTTAAGTCAGGCATGGAGACAATGGAGGAATCATACCCCACTGGAAATTATGGACTCAAACCTAAAAGAATCATATTGTCACACCGAAGTCATAAAGGGCATTCAAATTGGGTTATTGTGTGTGCAAGAAGACCCAGATGATAGGCCTACAATGGCCACAGTTATTTCATACCTTAATTCCCAATTAGTCGATTTGCCGTTTCCAAGAGAACCTGCTCTCTTTAGATACAGTGTTGGGAAATCAACCAACATGGAAGATGGAGATTGCAGTTCAGGTCACCAGTCCTCCAATAATTCCTCACCTTCTTCCATCAATGACATGTCCAAGAGTACTTTTTTCCCTCGTTAG	1770	0.4401	MATSKFYALTYPLLVFLTIFFITSKASFHYTAHYCSNATIFPTNTTFKRNLNVLLSSLTSNATQFGGYYMTIMGFGTTDAVNGLFLCRGDIISPIACEDCVTAAAKDITTRCPNRTEAIIWYDQCMLRYTGKYFRYDSVSPGVNLHDGKSFSGMDLGRFNVSLFNLLNYLTSKAAKPPTVKKFAVGQAILSTSPVTTVYALEQCTDDLTSDQCETCLRNAIGMFANCCEGKQGARFLLASCNIRYELYPFYNVTAVSSGPAVTLSTPSGKEKTETRTIVVIVVPVSVAVMIFCLGGFFLLKTKKKHKNVAFNESHGEEITPLESLQFSFATIEAATNNFSQLNKIGRGGFGEVYKGVLPDKREIAVKKLSSKSKQGVVEFKNEISLIAKLQHRNLVALFGFCLQEEEKMLIYEYVPNKSLDYFLFDSNPSRRKLNWSERYKIIGDVYSFGVIILEIISAKRNALSPKSKIFEDLLSQAWRQWRNHTPLEIMDSNLKESYCHTEVIKGIQIGLLCVQEDPDDRPTMATVISYLNSQLVDLPFPREPALFRYSVGKSTNMEDGDCSSGHQSSNNSSPSSINDMSKSTFFPR	589

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele35g0322	589	ProSitePatterns	Protein kinases ATP-binding region signature.	345	368	IPR017441	GO:0005524
	Lele35g0322	589	Gene3D	Phosphorylase Kinase; domain 1	300	414	-	-
	Lele35g0322	589	SUPERFAMILY	Protein kinase-like (PK-like)	329	550	IPR011009	-
	Lele35g0322	589	FunFam	Cysteine-rich receptor-like protein kinase 10	143	250	-	-
	Lele35g0322	589	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	31	443	-	-
	Lele35g0322	589	ProSiteProfiles	Protein kinase domain profile.	339	589	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele35g0322	589	Gene3D	-	27	134	IPR038408	-
	Lele35g0322	589	Gene3D	-	149	250	IPR038408	-
	Lele35g0322	589	ProSiteProfiles	Gnk2-homologous domain profile.	29	134	IPR002902	-
	Lele35g0322	589	Gene3D	Transferase(Phosphotransferase) domain 1	432	538	-	-
	Lele35g0322	589	MobiDBLite	consensus disorder prediction	559	589	-	-
	Lele35g0322	589	ProSiteProfiles	Gnk2-homologous domain profile.	139	250	IPR002902	-
	Lele35g0322	589	Pfam	Salt stress response/antifungal	157	248	IPR002902	-
	Lele35g0322	589	Pfam	Salt stress response/antifungal	35	130	IPR002902	-
	Lele35g0322	589	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 10	28	134	-	-
	Lele35g0322	589	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	301	414	-	-
	Lele35g0322	589	Pfam	Protein tyrosine and serine/threonine kinase	342	430	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele35g0322	Lele-ChrLele35	1940557	1943251	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele35g0322	439	589	Receptor kinase-like Gene Family	AT4G05200	35.099	5.95e-28	117

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Lele35g0322		PK_Tyr_Ser-Thr	1.5e-16	CL0016