Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g0315 ATGGATCTCATGAAACAAACCAAGAAAACCACAACCACAGGTCGCAAGAAGATCGAGATCAAGGAGATAGACAAAGATTCCAACAAACAAGTCACCTTCTCAAAACGACGCACCGGGCTGTTCAAGAAGGCCAGCGAGCTCTGCGTCTTGTGCAATGCTCAGATCGCTATCATCGTGTTCTCGCCGGCCGACAAAGCCTTTTGCTTTGGCCAACCCAGCGTCGAAGCCGTCCTCCGCCGATACAGCCACGAAGGGAAAGAAGATTATCACGACGAACAACCTATTAGGGCGCCGGCGAGCGAGATCATCAGTTCGATGTCTTACGAAGAACTTCACAGACAACACGAGGAAGCAGTGAAGGCATTGGAGATGGAGAAGCAACAATTGGAGGAGATAAAAAATGTGGCTAAGGTATGGAATAGAGGAAACTGGTGGGACGAACCGATTGATGGGATGGATTTGGATCAGTTAGAGCAATATGTGTTGGCCATGCATGAGTTAAGAAGAAAGGTTGCTGAGAAGGCTGATGAGTTAATGAGGGTTTCGATAATGCCGCCGTCGGCGCCGTCGTTTTATGGAGAAAGTTCGTTTGGTGGTGTTCTTAACGGAGGTGGCAGCGGCTATGGTGGTTTTGCTAACCAGCAGTTCGGTGGCGGTGGTCTTGTTGCTTATCATGAAAAGTTTGAATTTTGA 693 0.4848 MDLMKQTKKTTTTGRKKIEIKEIDKDSNKQVTFSKRRTGLFKKASELCVLCNAQIAIIVFSPADKAFCFGQPSVEAVLRRYSHEGKEDYHDEQPIRAPASEIISSMSYEELHRQHEEAVKALEMEKQQLEEIKNVAKVWNRGNWWDEPIDGMDLDQLEQYVLAMHELRRKVAEKADELMRVSIMPPSAPSFYGESSFGGVLNGGGSGYGGFANQQFGGGGLVAYHEKFEF 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g0315 230 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Lele35g0315 230 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Lele35g0315 230 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Lele35g0315 230 Coils Coil 157 177 - -
Lele35g0315 230 FunFam Agamous-like MADS-box protein AGL62 25 91 - -
Lele35g0315 230 PANTHER MADS BOX PROTEIN 15 174 - -
Lele35g0315 230 SUPERFAMILY SRF-like 14 89 IPR036879 GO:0003677|GO:0046983
Lele35g0315 230 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Lele35g0315 230 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Lele35g0315 230 CDD MADS_MEF2_like 18 81 IPR033896 GO:0000977|GO:0045944
Lele35g0315 230 Coils Coil 105 135 - -
Lele35g0315 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 69 IPR002100 GO:0003677|GO:0046983
Lele35g0315 230 Gene3D - 26 93 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g0315 Lele-ChrLele35 1906886 1907578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g0315 12 205 Type I MADS-box Gene Family AT2G24840 39.048 9.90e-39 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele35g0315 SRF-TF 7.2e-23 No_clan