Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g0299 ATGGCCAGTTTCGTGGGAACCACACAGAAATGCACCGTCTGTGACAAAACCGCCTACCCCGTCGATCGGTTGACCGCCGACAGCCGTGTTTACCATAAGGCTTGCTTCCGATGCCACCATTGCCGGAATACCCTCAAGCTGAGCAACTATTGTTCATTTGAGGGGGTGCTATATTGCAGACTCCATTATGATCAACTCTACAAGAGAACTGGTAGCCTTGACAAGAGCTTCGAAGGAACACCCAAGATTCAAAAACCTGAAAAACAATCGGAGAATGAGAATGCAAAGGTTCTCTCAAATGTGTTCCTCGGCACCAAAGACAAATGCTCAGATAACAGTGAATGGGACTCCATATCACAAAGGTTGCTTCAAGTGCAGCCATGGCGGCTAAAAATTTTGGTGATTATTGAACAGGAAAACGAGGGTAATGTAGAAGGAGAGGCACAACTTTTTGATGGAGAACAAGGTTGTAACGATGACTGTACCTCGTTATGTGAAACAGAAAGCTCCCTGGTTTCAATGTATTCTTCTCCAACATGGCAAGAAAATGTTTCATGTTCATCTTCTCGCGAGTTTGTTTCTGAATCTGATTTGGATCAGCAGCTTGCAGGGGATGTTACTCCGATGAGTGTTTCTCTTTCAGAGAGAGAAGAGAAGAATCGAGATCCACAGAAAGTGCTGGAAAAGCTGAACTTTCAGCTGTTAGATAAAAATGGAAGGGCGATGCCAATACAGGTGAAATATAGGACTTCTGTTGAGGAGAAGAAGAAGAAGAAGAAGAAAGGTAGAAATGAGTCAAATTCCTCACTCAACTGTTGA 819 0.4383 MASFVGTTQKCTVCDKTAYPVDRLTADSRVYHKACFRCHHCRNTLKLSNYCSFEGVLYCRLHYDQLYKRTGSLDKSFEGTPKIQKPEKQSENENAKVLSNVFLGTKDKCSDNSEWDSISQRLLQVQPWRLKILVIIEQENEGNVEGEAQLFDGEQGCNDDCTSLCETESSLVSMYSSPTWQENVSCSSSREFVSESDLDQQLAGDVTPMSVSLSEREEKNRDPQKVLEKLNFQLLDKNGRAMPIQVKYRTSVEEKKKKKKKGRNESNSSLNC 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g0299 272 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Lele35g0299 272 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Lele35g0299 272 MobiDBLite consensus disorder prediction 246 272 - -
Lele35g0299 272 CDD LIM1_SF3 7 69 - -
Lele35g0299 272 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Lele35g0299 272 Gene3D Cysteine Rich Protein 5 75 - -
Lele35g0299 272 FunFam LIM domain and actin-binding 1 5 75 - -
Lele35g0299 272 Pfam LIM domain 11 65 IPR001781 -
Lele35g0299 272 PANTHER OS06G0237300 PROTEIN 6 261 IPR045268 -
Lele35g0299 272 SMART lim_4 10 62 IPR001781 -
Lele35g0299 272 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g0299 Lele-ChrLele35 1804742 1807150 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele35g0299 LIM 4.6e-08 CL0167