Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g0211 ATGGACCTTGCGGCTTCGAGCTCTTTTGCCGGCGCCGTCGAATCTTCATCAGCCAACGATCGTAATGGCTCTAAACCACGAGACCACATGAGGCCCATCGGCCCCTTGCGAAGGACTGATCACTATGTTGCATTGTTAAGCGCTTGTGTTGCCGATACTGCTTCCTTGCGGTTGCCGCCGCCGAATGCGGTTGAATGTTCATCCGCCGCCTCGCCTTCTTTGCCAGATGATTTGAACGACGACGGATCATATTTACTCCGTTTTCTGGGTACCGAAAGCCTACCTGATTCGTCTTCGGAGGGACAGGTTACTGATGATAATGCAGAAACAAACCAGAACCCAATGAGTCATCATAAGGATTCAGACGGCCCCCAGGAACAGTTTGTATCTGAAGACGGATTAGAGATCCACAATGTTAACGTTCAGCTCCAGAATGATCCATTCGAAAACCCTAATGACAGTTCAAATCAAGGTGAAGTTGCACCTATTAAGTATAATTCTTGGAGCACTGGAGATTGGAACATTGTCAAACGATTCAATGACAAATACATGCCAATGCCACCTGAAGTTGCTCTTGGGGTTGGGCCGCGACCGCTGCCACCATTTTATGCTGATGCTGATCAGTCACTGGGTATCGAAAGCCCAACTTCGTCTTCAGAGGGACAAGTTGCTGAGGATAATGCAGAACTCAACCAGAAACCAGTGAGTCATAGGGATTCAGACGGCGGCCACCAGGAGCAATTTGTAGCTGATGATCACGATACACAGGAGAGTAGGGTTGAATCTGGATCAGAGATCCACAATATTAACGTTCAGCTCCAGAATGATTCATTCAAAAACCCTAACGGCAGTTCAAATCAAAGGGAAGTTGCACTTGCACCTATTCATTGTAATTCTTGGAGCACTGAAGATTGGAACATTCACACAATTTTCAATAACAAATACATCGACATGCCACCTCAAGCTGCTTTTGCGGTCGGGCCGCGACTACTGCCGCCGCCGCCACCATTTTATTCTGATGCTGATCAGTATTTGCTCCTATCACTGTCACCAACTTACGGAGTCGCTGGTCGCGGGAGCTCTGGCTACGCAGCTGCTGCTGGCTATGATTTTCTTTTTTCATAAGCATTTTTACTTGATGTGCTCCTTGCAAAGGCTTCAAAGAGTTCTACATTGGTGGGGAAGATGACCGTATTGGTCTTTGCAATGGTCTGCGGAGTGTATATGTGTTCTATTTGTCTAAAGCAGATAAGCACGCCCACTAAGATTGGATTTTTGTATATAAAGGTCGTCAACGAGACATGCCCAGAACCCAACATTGAACCATGGGAAATGCCTTACGTGCACTACCCAAAACCCAAAACTTACAGCAGGGCTGACTGTGCTTGCAATCCTGTGAGGAATTTTGCCCTGTTGTCAATGCAAAGATCTGGGAGTGGATGGTTTGAGACGTTTTTAAATAGTCATACTAACATAAGCTCAAACGGGGAAATTTTCTCTGTTAAAGTGAGAAGGAGTAATATCTCAACCATTGTGGAGACTCTGGATAAAGTTTATAATCTAGACTGGTTAAGCAGCGCGTCAAAAAATGAATGCACAGCTGCAGTTGGCTTAAAGTGGATGCTTAATCAGGGGTTGATGCAAAATCATGAACAAATAGTTGAGTACTTCAGAAAACATGGTGTTTCAGTTATATTTCTTTTCCGAAGGAATCTCCTCCGTAGGATGATTTCTATACTCGCAAATCAATATGACAAAGATGCTAAGCTATTAAATGGGACTCACAAGTCTCATGTTCATTCTCCCCGTGAGGCAGAGACACTTGCAAAATACAAGCCCAGAATCAACTCAACGTCATTGATGTCCGAACTGAGGAAAGTAAATGAAACCACCACGAAGGCCTTGGGATATTTCAAGAGCATCCGACATATTGTCATATACTATGAGGATGTTGTCAAAAAACGCACTAAATTAGCAGACGTTCAAGATTTTCTCAAGGTACCTCATAAAGATTTGAAGAGCCGTCAGGTGAAGATACATAAAGGGCTCTTATCCAATCAGATTGAGAATTGGAATGATGTCAGCAAGACACTCAATGGGACAGCATATGAGAGCTTCCTTCATGCAGATTACCGGTTTAACATGAGTGCACGTGAGGTTGGAATCCAGGAGTGTGTTTGGCATATCCAACCCCCTCCATCCCTCCATATATATAGACACCCCAATCTTCAACTTCTTCCTCTTTCCACCCCCTCTCTCTCTGGACCTTACCTGGTCTCGGCCTCCGACCCTGCTTGGACCAGGTCCTCTCCTTCCCTCTCCCTCATCTCCCAATTTCTGCTCGACAGCTTCCGGAGTTGGAGAGGAAACAAGGTACAGAGAAGCTCCATAGAAGCCATGGCTCAACCCACCAACGCGGCGGATCTGAATCAGCACCAGCATCAGCAGCAGTGGACGTCGCAGCAGCCGCATCACTATCAGCAGCAATGGATGGCTATGCAGTACCCTGCTGCGGCCATGGCCATGATGCAGCAGCAGATGATGTATCCACAACATTACATGCCTTACGTCCACCATTACATGCCTCCGCACCAGCAGCAGCAGCAACTCAAGCCGCAGCCGTATCAGCAGCAGCAGCAGCAGAAGCAAGGGTCCTCCGATGAGATCAGGACGATATGGCTCGGTGACCTTCATCATTGGATGGATGAGAACTACCTACACAACTGTTTTGCTCATACAGGCGAGGTTGTCTCTGCCAAGGTTATACGTAATAAACAAACTAGCCAGTCTGAGGGCTATGGATTTGTTGAGTTTTATTCACGTGCAACAGCTGAGAAAGTTTTGAACAGCTACAATGGTACTATGATGCCAAATACCGATCAGCCCTTCCGTCTAAATTGGGCTACTTTCAGTGCGGGTGATAGGAGATCTGATGCTAGTTCTTCTGATCTGTCTATTTTTGTTGGGGACCTGGCTATAGATGTTACTGATGCTATGCTGCACGAAACCTTTGCTAGCAGATATACATCTGTAAAGGGAGCCAAGGTCGTCATTGATCCAAATACTGGCCGTTCAAAAGGTTATGGTTTTGTAAGGTTTGGTGATGAAACTGAGAGGACTAGGGCCATGACTGAAATGAATGGATGCTATTGTTCAAATCGGCCTATGCGTATAGGTGTTGCAACCCCAAAGAAGTTCCATGGGTATCAACAACAATATTCTTCCCAAGCTGTAGTATTAGCTAATGGACATTCATCTAATGGTGCTACCACACAAGGTTCCCAGCCTGAAGGGGACTCAATTAACACAACTATTTTTGTTGGGGGCCTTGATTCTGATATTAGAGATGATGATCTCAGACAACCATTTTTGCAATTTGGTGAGGTTGTCTCAGTCAAAATACCTGTGGGTAAAGGTTGTGGTTTTGTTCAATTTTCTGACAGGAAGAATGCTGAGGAAGCACTTCAAGCATTGAATGGGACAGTAATTGGGAAACAGACCGTACGTCTTTCTTGGGGTCGCAGTCCTGGAAATAAGCATTGGAGAACAGATTCCAATGGAGGTCACTATGGAAGCCAGGGGTCTGCCATGCGACAAAACCAAGATATCAGTATGAACGTTGCTGCTGCAGTTCAAGGGGCATCCTGA 3648 0.4583 MDLAASSSFAGAVESSSANDRNGSKPRDHMRPIGPLRRTDHYVALLSACVADTASLRLPPPNAVECSSAASPSLPDDLNDDGSYLLRFLGTESLPDSSSEGQVTDDNAETNQNPMSHHKDSDGPQEQFVSEDGLEIHNVNVQLQNDPFENPNDSSNQGEVAPIKYNSWSTGDWNIVKRFNDKYMPMPPEVALGVGPRPLPPFYADADQSLGIESPTSSSEGQVAEDNAELNQKPVSHRDSDGGHQEQFVADDHDTQESRVESGSEIHNINVQLQNDSFKNPNGSSNQREVALAPIHCNSWSTEDWNIHTIFNNKYIDMPPQAAFAVGPRLLPPPPPFYSDADQYLLLSLSPTYGVAGRGSSGYAAAAGYDFLFSXAFLLDVLLAKASKSSTLVGKMTVLVFAMVCGVYMCSICLKQISTPTKIGFLYIKVVNETCPEPNIEPWEMPYVHYPKPKTYSRADCACNPVRNFALLSMQRSGSGWFETFLNSHTNISSNGEIFSVKVRRSNISTIVETLDKVYNLDWLSSASKNECTAAVGLKWMLNQGLMQNHEQIVEYFRKHGVSVIFLFRRNLLRRMISILANQYDKDAKLLNGTHKSHVHSPREAETLAKYKPRINSTSLMSELRKVNETTTKALGYFKSIRHIVIYYEDVVKKRTKLADVQDFLKVPHKDLKSRQVKIHKGLLSNQIENWNDVSKTLNGTAYESFLHADYRFNMSAREVGIQECVWHIQPPPSLHIYRHPNLQLLPLSTPSLSGPYLVSASDPAWTRSSPSLSLISQFLLDSFRSWRGNKVQRSSIEAMAQPTNAADLNQHQHQQQWTSQQPHHYQQQWMAMQYPAAAMAMMQQQMMYPQHYMPYVHHYMPPHQQQQQLKPQPYQQQQQQKQGSSDEIRTIWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKQTSQSEGYGFVEFYSRATAEKVLNSYNGTMMPNTDQPFRLNWATFSAGDRRSDASSSDLSIFVGDLAIDVTDAMLHETFASRYTSVKGAKVVIDPNTGRSKGYGFVRFGDETERTRAMTEMNGCYCSNRPMRIGVATPKKFHGYQQQYSSQAVVLANGHSSNGATTQGSQPEGDSINTTIFVGGLDSDIRDDDLRQPFLQFGEVVSVKIPVGKGCGFVQFSDRKNAEEALQALNGTVIGKQTVRLSWGRSPGNKHWRTDSNGGHYGSQGSAMRQNQDISMNVAAAVQGAS 1215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g0211 1215 MobiDBLite consensus disorder prediction 863 888 - -
Lele35g0211 1215 CDD RRM2_SECp43_like 983 1062 - -
Lele35g0211 1215 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 890 970 IPR000504 GO:0003723
Lele35g0211 1215 SUPERFAMILY RNA-binding domain, RBD 862 973 IPR035979 GO:0003676
Lele35g0211 1215 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 382 711 - -
Lele35g0211 1215 MobiDBLite consensus disorder prediction 92 111 - -
Lele35g0211 1215 Gene3D - 853 975 IPR012677 -
Lele35g0211 1215 Gene3D - 976 1076 IPR012677 -
Lele35g0211 1215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 463 701 IPR027417 -
Lele35g0211 1215 FunFam Polyadenylate-binding protein RBP47B 976 1074 - -
Lele35g0211 1215 Gene3D - 466 696 IPR027417 -
Lele35g0211 1215 MobiDBLite consensus disorder prediction 210 226 - -
Lele35g0211 1215 MobiDBLite consensus disorder prediction 197 286 - -
Lele35g0211 1215 MobiDBLite consensus disorder prediction 21 36 - -
Lele35g0211 1215 SUPERFAMILY RNA-binding domain, RBD 984 1177 IPR035979 GO:0003676
Lele35g0211 1215 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1103 1175 IPR000504 GO:0003723
Lele35g0211 1215 MobiDBLite consensus disorder prediction 1174 1196 - -
Lele35g0211 1215 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1105 1168 IPR000504 GO:0003723
Lele35g0211 1215 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 986 1055 IPR000504 GO:0003723
Lele35g0211 1215 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 892 959 IPR000504 GO:0003723
Lele35g0211 1215 MobiDBLite consensus disorder prediction 262 286 - -
Lele35g0211 1215 SMART rrm1_1 891 966 IPR000504 GO:0003723
Lele35g0211 1215 SMART rrm1_1 985 1059 IPR000504 GO:0003723
Lele35g0211 1215 SMART rrm1_1 1104 1171 IPR000504 GO:0003723
Lele35g0211 1215 CDD RRM1_SECp43_like 891 971 - -
Lele35g0211 1215 FunFam Polyadenylate-binding protein RBP47 1085 1200 - -
Lele35g0211 1215 MobiDBLite consensus disorder prediction 231 261 - -
Lele35g0211 1215 Gene3D - 1081 1205 IPR012677 -
Lele35g0211 1215 MobiDBLite consensus disorder prediction 1 37 - -
Lele35g0211 1215 CDD RRM3_NGR1_NAM8_like 1102 1173 - -
Lele35g0211 1215 MobiDBLite consensus disorder prediction 112 126 - -
Lele35g0211 1215 FunFam polyadenylate-binding protein RBP47 isoform X2 839 975 - -
Lele35g0211 1215 MobiDBLite consensus disorder prediction 57 162 - -
Lele35g0211 1215 MobiDBLite consensus disorder prediction 801 820 - -
Lele35g0211 1215 MobiDBLite consensus disorder prediction 137 162 - -
Lele35g0211 1215 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 984 1063 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g0211 Lele-ChrLele35 1291214 1304902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g0211 892 1182 Eukaryotic Initiation Factors Gene Family AT4G34110 28.808 6.52e-23 103