Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g0200 ATGCGCGAAGCAGACAATGTCAAAGCTTCGTTTCGCCAAGGGCAGGCATACATGGCGCTCAATGACATTGATGCTGCAGTAGAAAGCTTCAAAAAGGCACTAATCTTGGAGCCAAATGATGCTGGAATAAAAAAGGAACTTACTGCTGCCAGGAGGATGATTGCTGATAGACGCAATCGGGAAAAGATGCATGTAAAAAAATGTTTCAATAACATTTCTGGTATGTGCTAA 231 0.4242 MREADNVKASFRQGQAYMALNDIDAAVESFKKALILEPNDAGIKKELTAARRMIADRRNREKMHVKKCFNNISGMC 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g0200 76 SMART tpr_5 7 40 IPR019734 GO:0005515
Lele35g0200 76 Gene3D Tetratricopeptide repeat domain 2 70 IPR011990 GO:0005515
Lele35g0200 76 Pfam Tetratricopeptide repeat 8 40 IPR001440 GO:0005515
Lele35g0200 76 ProSiteProfiles TPR repeat region circular profile. 7 40 - -
Lele35g0200 76 PANTHER PEPTIDYLPROLYL ISOMERASE 4 74 - -
Lele35g0200 76 SUPERFAMILY TPR-like 5 70 IPR011990 GO:0005515
Lele35g0200 76 ProSiteProfiles TPR repeat profile. 7 40 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g0200 Lele-ChrLele35 1244164 1244870 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g0200 3 63 Calmodulin-binding Proteins AT3G25230 42.623 2.64e-07 44.3