LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele35g0163	ATGATAACTCAAGATGTATATCATAATTCCGTGTCTACTGCAATACCCTTTGTAAATTCATATACAGCTGAATTTTCCCTTCGCCCCAACATTTGGGCAAACCAGGGTGGTATTAGGAATTATAATGGACTCAGTCTACATTCTTTGTTTGGTGCTGCCTTGACAATTTTAGAAAGAGAACAAAGTATATTCATTGAGAAGGAAATTGATTCAAGAACATTATGTGATGGGAACTTACAGCCTGGAAGTACCATTCCTAGAAAATCAAGAGAAAATGGTAATGGGTCTTCAATGCGCGATAGTGATGCTGCTGAGGAGGAGGCTACTGATACTGAAAACTTCAATACTGTTCATGTGAATAGAAATTCTGCATCGGAGGATATTGCAGAAGAAGATGAGATAAGAAAAGAAAGAAAAAGGCAGTTAAACAGGGAATCAGCTCGAAGATCAAGAATACGCAAGCAGCAAGAACTCGAAGAACTACAGAATATTGTGGACAATCTTATCCGAGAAAATTCCGTTCTGAAGAAAAAGCTAACGAGTCTTTCCGAGGATTGTATGGAGCTCTCCGGTACAAACGACTCCATTGAGGGAGAGCTCATCGAGGAGTATGGACCAGAAATAATCGCCGATTTTGTGGCCACCAAGCCAGCCAGAATCCCTTCTGATGAAAGCCCAAAGATAGTCAAGGAAGCAACCCATCAAAATCCACCAATTGAAGTCTAG	726	0.405	MITQDVYHNSVSTAIPFVNSYTAEFSLRPNIWANQGGIRNYNGLSLHSLFGAALTILEREQSIFIEKEIDSRTLCDGNLQPGSTIPRKSRENGNGSSMRDSDAAEEEATDTENFNTVHVNRNSASEDIAEEDEIRKERKRQLNRESARRSRIRKQQELEELQNIVDNLIRENSVLKKKLTSLSEDCMELSGTNDSIEGELIEEYGPEIIADFVATKPARIPSDESPKIVKEATHQNPPIEV	241

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele35g0163	241	MobiDBLite	consensus disorder prediction	75	152	-	-
	Lele35g0163	241	Gene3D	-	122	193	-	-
	Lele35g0163	241	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	133	196	IPR004827	GO:0003700\|GO:0006355
	Lele35g0163	241	PANTHER	G-BOX-BINDING FACTOR 3-RELATED	109	207	IPR044827	GO:0003700\|GO:0006355\|GO:0043565
	Lele35g0163	241	MobiDBLite	consensus disorder prediction	124	152	-	-
	Lele35g0163	241	SUPERFAMILY	Leucine zipper domain	134	189	IPR046347	GO:0003700\|GO:0006355
	Lele35g0163	241	MobiDBLite	consensus disorder prediction	76	99	-	-
	Lele35g0163	241	MobiDBLite	consensus disorder prediction	220	241	-	-
	Lele35g0163	241	Coils	Coil	144	185	-	-
	Lele35g0163	241	CDD	bZIP_plant_GBF1	136	187	IPR045314	GO:0003700\|GO:0006355
	Lele35g0163	241	Pfam	bZIP transcription factor	131	190	IPR004827	GO:0003700\|GO:0006355
	Lele35g0163	241	SMART	brlzneu	131	195	IPR004827	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele35g0163	Lele-ChrLele35	992031	995256	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele35g0163	128	212	bZIP Transcription Factor Family	AT4G36730	43.529	3.12e-16	74.7

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Lele35g0163		bZIP_1	1.1e-13	CL0018