Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g0111 ATGGAGTCACCAGCAGTTGGTTTGCTGCCGGCTAAACGCCCTGCAGATGGATTTAATTCAGAGAAACACAAAAGATTAAAAGTTGTAGACTATAGCAATCCATATGCAATTGCGGACTTGCTTGATGGCCTGAACCACGGAAAATTTGGAAGTGTCACCAAGGATATAGAGTCCCTTATTGCTCAAAAGATGAAGACGTTGAGCCCTATATTTGCTAAAGATCCTGCACTTCTACGGTTTGTGAAAGTGGGAATGAATCGTGATGAAGAAGCTGCTAAGAAAATCATAGATTTGGGGGATAATCCCATGACAAAAACTGCTTCAACAGCATCATCAACTGTTGTAATTATTGATTCAGATGAGGAAGATGATAGAGATAAGAAACCTTGTCTGTCATTTCAAGAAGTTATACTGCCAAAGCCTGTTGTCCGGTATACTACAAAAGACATACTTGAGTACCATGGTCCCAATGCACATCATCCTCCTATTGGGTTTCATGCTGGAAGTTTAGATGTAAAACCTGAACCTTTTCTCGTTGGCAAATATGACATTGGAAAAGATAAAGGTGCTTTTATTGGTGTTCAAGAGGAAGACAGTCCACAGGCTGACACAAAGGATGATGGGCTAGAAGATATTTGGAGGGAGATGTCAATGGCAATAGAATGTTCCAAAGATGTTGATATGGATTCTCTACATGATGAAGCTGAAAAGGATGTGGGAGACTGTGATCACTCTTATGTTTTAAAAGATGATCTTGGTTATGTTTGTCGCGTTTGTGGGGTTATCGACAGAGGAATTGAAACCATATTTGAATTCCAGTACAAGGTTAAAAAGAGTTCAAGAACTTACATGGCTGATTCCCGGAATTTCAAAGAGAGATCAGCGCCTGATGTATCGGGACTTAAATTTGGTGAAGATGGTCTGGTGATATCTGAACTCTCTGCTCACCCCAGGCATATGAAGCAAATGAAACCTCATCAAGTTGAAGGATTTAATTTTCTTGTCAGAAACCTTGTGGGTGACAATCCTGGTGGCTGCATCTTGGCCCATGCTCCTGGTTCTGGGAAGACATTCATGATAATCAGTTTCATGCAAAGCTTTCTTGGCAAGTATCCTAATGCCCGACCCCTTGTGGTTCTTCCTAAGGGAATATTGGCTACTTGGAAAAAAGAGTTTCAAACATGGCAAGTGGAGGACATTCCACTCTATGATTTTTACTCCGCTAAGGCAGACAGTCGGTTTCAGCAGTTGGAAGTTTTGAAAAAGTGGGTAGAGCAGAAGAGTATTCTTTTCCTAGGATACAAACAATTCTCTTCAATTGTCTGTGATACTGGAACTAGCCAGGTGTCCACATCTTGCCAAGAGATATTGCTTAGGGCTCCCTCTATTCTCATTTTAGATGAGGGACACACACCCAGGAATGACAATACTGACATAGTTCAGTCCCTTACCAAAGTGCTAACACCTCGGAAAGTTGTACTGTCAGGAACCCTGTATCAAAATCATGTCAAAGAGGTGTTCAACATTTTGAACATTGTGCGTCCACCAAATTTTCTACGTTCACAGACATCTCGACCTATTGTCAGGCGTATTAAGAGTAGAGTACATGTACCTGGTGTGAAGGATTTCTGTGACTTGGTGGAGAACACTTTGCAGAAGGACCCTGATTTTAAAAGGAAAGTGGCTGTCATTCAAGATTTGCGTGAGATGACAGGCGAGGTACTTCATTACTACAAGGGAGATTTTCTTGATGAGCTTCCTGGCCTTGTAGATTTCGCAGTTGTGCTCAATCTTACTCCCCGACAGAAGCATGAAGTCCATAAGCTAAAGCACTTATCCAGAAAGTTTAAGATAAGCTCTGTTGGAAGTGCTGTTTATCTTCATCCTAAATTAAAGCCTATGGCAGAAAATTGTGCTGAGAATTCTGCTGTATCTGATCACACGATGGATGAGATGATAGAGAGTCTAGATTTGGAAGATGGGGTGAAGTCAAAATTCTTTCTTAAAATGCTGAGCCTATGTGAATCAAGTGGGGAGAAGCTTCTAGTCTTTAGCCAATATCTCTTGCCTTTGAAGTACTTAGAAAGGTTAACTATGAAACGGAAGGCATGGAGTCCTGGAAAAGAGATATTTGTCATATCAGGTGAATCCAGCTCTGAACAAAGAGAATGGTCCATGGAGCAGTTTAACAATTCACCAGATGCTAAAGTCTTCTTTGGCTCAATCAAGGCATGTGGAGAAGGCATATCTTTGGTTGGAGCATCACGCATAATTATTTTGGATGTTCATCTAAATCCATCAGTTACACGCCAAGCAATTGGCCGTGCATTCCGACCAGGTCAGACAAAGAAAGTCTTTGCATATCGGTTGATAGCTGCTGATTCTCCTGAACAGGAAGACCATGATACTTGCTTCAAGAAGGAATTGATATCAAAAATGTGGTTTGAATGGAATGAGTATTGTGGTTTTCATGATTTTGAAGTTGAGACTGTTGATGTGGAACAGTGTGGTGATGTCTTTCTGCAAACTCAATTGATAAGGGATGATATAAAAATTCTGCATAGAAGGCCTTGA 2574 0.4099 MESPAVGLLPAKRPADGFNSEKHKRLKVVDYSNPYAIADLLDGLNHGKFGSVTKDIESLIAQKMKTLSPIFAKDPALLRFVKVGMNRDEEAAKKIIDLGDNPMTKTASTASSTVVIIDSDEEDDRDKKPCLSFQEVILPKPVVRYTTKDILEYHGPNAHHPPIGFHAGSLDVKPEPFLVGKYDIGKDKGAFIGVQEEDSPQADTKDDGLEDIWREMSMAIECSKDVDMDSLHDEAEKDVGDCDHSYVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKKSSRTYMADSRNFKERSAPDVSGLKFGEDGLVISELSAHPRHMKQMKPHQVEGFNFLVRNLVGDNPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILATWKKEFQTWQVEDIPLYDFYSAKADSRFQQLEVLKKWVEQKSILFLGYKQFSSIVCDTGTSQVSTSCQEILLRAPSILILDEGHTPRNDNTDIVQSLTKVLTPRKVVLSGTLYQNHVKEVFNILNIVRPPNFLRSQTSRPIVRRIKSRVHVPGVKDFCDLVENTLQKDPDFKRKVAVIQDLREMTGEVLHYYKGDFLDELPGLVDFAVVLNLTPRQKHEVHKLKHLSRKFKISSVGSAVYLHPKLKPMAENCAENSAVSDHTMDEMIESLDLEDGVKSKFFLKMLSLCESSGEKLLVFSQYLLPLKYLERLTMKRKAWSPGKEIFVISGESSSEQREWSMEQFNNSPDAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQTKKVFAYRLIAADSPEQEDHDTCFKKELISKMWFEWNEYCGFHDFEVETVDVEQCGDVFLQTQLIRDDIKILHRRP 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g0111 857 CDD SF2_C_SNF 663 791 - -
Lele35g0111 857 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 337 516 IPR014001 -
Lele35g0111 857 SMART ultradead3 319 523 IPR014001 -
Lele35g0111 857 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 196 854 IPR044567 GO:0080188
Lele35g0111 857 Gene3D - 587 835 IPR027417 -
Lele35g0111 857 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 312 518 IPR027417 -
Lele35g0111 857 Pfam SNF2-related domain 343 528 IPR000330 GO:0005524|GO:0140658
Lele35g0111 857 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 461 818 IPR027417 -
Lele35g0111 857 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 666 834 IPR001650 -
Lele35g0111 857 Pfam Helicase conserved C-terminal domain 669 779 IPR001650 -
Lele35g0111 857 SMART helicmild6 692 780 IPR001650 -
Lele35g0111 857 Gene3D - 301 537 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g0111 Lele-ChrLele35 690098 695524 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g0111 677 798 RAD5 or RAD16-like Gene Family AT5G43530 36.066 2.61e-14 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele35g0111 SNF2_N 5.1e-20 CL0023