Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g0109 ATGGGGAAGAATAAAGTGAAGGAAAGTGGAGGGAAAGAGCATTGCCCCTCGACTTTGTTTGTCTCGAACTTTCCCTACTCATTCACCAATTCTCAGCTGGAGGAGACGTTTAGCGAAGTTGGACCAATCAGGCGTTGCTTCATGGTCATGCAGAAGGGGTCATCTCAGCATCGTGGTTTTGGTTATGTTCAATTTGCTGTTGAGGAAGATGCTAACCGTGCAATTGAGTTGAAGAATGGTTCATCCATTGGAGGCCGGAAAATTGCAGTAAAGCATGCGACGCCTCGTCCTCCCCGTGAAGCACGACAGTCAAAGTCAAATCAAGTGGAGAATGCAGATGATATCCCAAAGTCGAAAAATGATGACAATGATGGTGGATTTTCTGGCGTGGAGAAGCCTTCTTCAGTTATTAAGGAAAAAGTTGTAAATAATGAAAACCATTCAAGGAAGCCTAGTGAAGTGAAAAAAGCAGTTCTTTGTAGTGATATAGCAGATGAGGGAGGTTGTTCTGAAAAACAGAGGGTTGCTAGAACTGTCATATTTGGTGGTCTTATCAATTCGGATATGGCTGAAGTTGTTCACAGCCGAGCAAGGGAGAGTGGCAGTGTGTGTTCTATAAAGTACCCCCTTCCTAGGGAAGAATTTGAACAGCATGGTCTCTTTCAAGATGGATGTAAATTGGATGCTTCAACTGTACTTTACACAAGTGTGAAATCAGCACGAGCTTCTGTTGCGCTGCTGCATCAGAAAGAAATTGGAGGAGGAACTGTTTGGGCACGTCAATTGGGTGGAGAGGGCTCCAAGACACAAAAATGGAAGCTTATTGTTAGAAATCTTCCATTCAAGGCCAAGGAAAATGAAGTAAAAGAAATGTTTTTATCTGCTGGTTTTGTGTGGGACGTATTTATTCCACGCAAGTCTGATACAGGATTGTCCAAGGGTTTCGCATTTGTGAAATTCACTTGCAAGCAAGATGCAGAAAATGCTATTCAGAAGCTTAATGGATCAAAGTTTGGTAAACGGCTTATAGCTGTTGATTGGGCTGTTCCAAAGAAGATATATAGCAGTGATGCAAGTGCTATGCTTGCTTTAGAAAATGGACAACACAAGGTGACAGATGAAGATGGTAGTAGTTCAGAGGACAATTCAGAGGATGATGTTGAGGAGACGGGCAAACAGGCCCATCAAGAAGATGTTACTGATCGAGATGACTCTAGCTTCTCACATGAAGAAGATGTACCATCTGAAGTTAACTTTGATAAGGAGGCAGAGATTGCCAAAAAGGTTCTTAAGAACCTAATCACATCCTCCACCAAAGGAACATCCGCAAATGATGATTCTATGTTGTCCAAGAAAAACAAGGAACCAAAATCCAATGAAAATGTTAATGAGGAAAAGGTTACAGATGTTTCTGAGCCTGAAATCTTGGACAAAAGCAAGATATCTAATCTTAAGCAAACAGAAGAAGATTTGCAGGGAACAGTTTTTATAAGTAATCTTCCCTTTGACTGTGATAATGAAGAAGTGAAACAACGATTCTCTGGATTTGGGGAAGTGGACTACTTTAAACCAGTCCTCCACCAGGTGACCAAACGGCCAAGAGGAACTGGTTTTCTCAAGTTTAAAACTGCAGATGCAGCTGATGCTGCAGTTTCAACTGCTAGTGCTGCTTCTGGCTTGGGTATTCTTCTCAAAGGTAGGCCATTAAAAGTTTTGAGGGCTTTAGATAAGAAGTCGGCTCATGACAAGGAACTAATGAAGGCCAAAAATGACAACCATGATCACCGCAATCTTAACCTGGCAAAGGAAGGACTCATTCTTGAAGGAACTCCAGCTGCTGAAGGGGTTTCAGCCAGTGATATGTTAAAACGCCAGGAGTTGGAAAGAAAAAAGGCAACAAAGCTACAATCGCCAAATTTTCATGTTTCAAGAACTAGACTTGTTATTTACAACTTACGAAATTCGATGACTGAAAAAGAGCTCAAGAAGCTTTGCATTGATGCAGTTACCTCTAGAGCAACCAAGCAAAAGCCTCAAATACGGCAGATAAAGTTCATGAAGGATGTGAAGAAAGGAAAGGTTGTTACAAAACATCATTCACGTGGAGTTGCCTTTGTTGAATTTTCAGAGCATCAACATGCCCTTGTGGCTCTAAGAGTTCTCAATAATAATCCAGAAACTTTTGGTCCTGATCACCGGCCAATTGTGGAGTTTGCTGTTGATAATGTTCAAACACTTAAACTTCGGAAAGCAAAGCTACAGTTTCATCAGCAGGCTGCTGCTCATGGTGACAGTAACGTCGAGGAAAATGAGGAATCCCATGTTCCAGGTTTCCGTACAAATGGAAAGGATAGAAAACGAAAATTACAGGATCGTGACAAGTCAGTGAAGGAGTCAGTACTCGATAAAGAAGACATATCAGCAAGTATATTGCCAAATAAAAATGCTGTGGTAGCACGCAATGCCAAAAGGCTGAAAAAAGGCAACCATAAAAGTAAAAAGGCAGAAGGGTCTTCGTCACATAAAGAAAATTCAGAAACCTTGTCCATGAAGCCGAATAATTACCAAGATGACCAGAATCATGGTGGTAGGACGTCAGACACTGTTATTGACTCCCACAAAGCAAACAAGGGTAAAAAAGTAGATCATGGACTGAAGAAGAGGAGGACGCAGAATCAAGCAGAAGCTGCGGAAAATGTACCGAGGAAACGATCAAAAAAGAATAAAGAGCCTGTAGGGAAGGACGTGGTAGATAAGCTTGACATGCTTATACAGCAATATAAATCGAAGTTCTCACAACAGGGTTCACAAGGGAATGATGGAGGGAAAAAACCTTCCAAACAGTTAAGAAAATGGTTTGAACCATAA 2868 0.4146 MGKNKVKESGGKEHCPSTLFVSNFPYSFTNSQLEETFSEVGPIRRCFMVMQKGSSQHRGFGYVQFAVEEDANRAIELKNGSSIGGRKIAVKHATPRPPREARQSKSNQVENADDIPKSKNDDNDGGFSGVEKPSSVIKEKVVNNENHSRKPSEVKKAVLCSDIADEGGCSEKQRVARTVIFGGLINSDMAEVVHSRARESGSVCSIKYPLPREEFEQHGLFQDGCKLDASTVLYTSVKSARASVALLHQKEIGGGTVWARQLGGEGSKTQKWKLIVRNLPFKAKENEVKEMFLSAGFVWDVFIPRKSDTGLSKGFAFVKFTCKQDAENAIQKLNGSKFGKRLIAVDWAVPKKIYSSDASAMLALENGQHKVTDEDGSSSEDNSEDDVEETGKQAHQEDVTDRDDSSFSHEEDVPSEVNFDKEAEIAKKVLKNLITSSTKGTSANDDSMLSKKNKEPKSNENVNEEKVTDVSEPEILDKSKISNLKQTEEDLQGTVFISNLPFDCDNEEVKQRFSGFGEVDYFKPVLHQVTKRPRGTGFLKFKTADAADAAVSTASAASGLGILLKGRPLKVLRALDKKSAHDKELMKAKNDNHDHRNLNLAKEGLILEGTPAAEGVSASDMLKRQELERKKATKLQSPNFHVSRTRLVIYNLRNSMTEKELKKLCIDAVTSRATKQKPQIRQIKFMKDVKKGKVVTKHHSRGVAFVEFSEHQHALVALRVLNNNPETFGPDHRPIVEFAVDNVQTLKLRKAKLQFHQQAAAHGDSNVEENEESHVPGFRTNGKDRKRKLQDRDKSVKESVLDKEDISASILPNKNAVVARNAKRLKKGNHKSKKAEGSSSHKENSETLSMKPNNYQDDQNHGGRTSDTVIDSHKANKGKKVDHGLKKRRTQNQAEAAENVPRKRSKKNKEPVGKDVVDKLDMLIQQYKSKFSQQGSQGNDGGKKPSKQLRKWFEP 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g0109 955 MobiDBLite consensus disorder prediction 887 917 - -
Lele35g0109 955 MobiDBLite consensus disorder prediction 757 801 - -
Lele35g0109 955 SUPERFAMILY RNA-binding domain, RBD 494 664 IPR035979 GO:0003676
Lele35g0109 955 MobiDBLite consensus disorder prediction 926 943 - -
Lele35g0109 955 MobiDBLite consensus disorder prediction 86 135 - -
Lele35g0109 955 MobiDBLite consensus disorder prediction 388 420 - -
Lele35g0109 955 Gene3D - 644 739 IPR012677 -
Lele35g0109 955 CDD RRM1_RBM28_like 18 96 - -
Lele35g0109 955 MobiDBLite consensus disorder prediction 842 866 - -
Lele35g0109 955 MobiDBLite consensus disorder prediction 817 955 - -
Lele35g0109 955 SUPERFAMILY RNA-binding domain, RBD 17 258 IPR035979 GO:0003676
Lele35g0109 955 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 272 350 IPR000504 GO:0003723
Lele35g0109 955 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 274 343 IPR000504 GO:0003723
Lele35g0109 955 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 88 IPR000504 GO:0003723
Lele35g0109 955 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 495 553 IPR000504 GO:0003723
Lele35g0109 955 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 645 741 IPR000504 GO:0003723
Lele35g0109 955 SMART rrm1_1 494 572 IPR000504 GO:0003723
Lele35g0109 955 SMART rrm1_1 273 346 IPR000504 GO:0003723
Lele35g0109 955 SMART rrm1_1 18 91 IPR000504 GO:0003723
Lele35g0109 955 SMART rrm1_1 646 737 IPR000504 GO:0003723
Lele35g0109 955 Gene3D - 2 131 IPR012677 -
Lele35g0109 955 Gene3D - 259 389 IPR012677 -
Lele35g0109 955 SUPERFAMILY RNA-binding domain, RBD 268 353 IPR035979 GO:0003676
Lele35g0109 955 CDD RRM4_RBM28_like 645 742 - -
Lele35g0109 955 MobiDBLite consensus disorder prediction 765 801 - -
Lele35g0109 955 MobiDBLite consensus disorder prediction 112 126 - -
Lele35g0109 955 FunFam - 1 128 - -
Lele35g0109 955 Gene3D - 480 584 IPR012677 -
Lele35g0109 955 MobiDBLite consensus disorder prediction 437 471 - -
Lele35g0109 955 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Lele35g0109 955 SUPERFAMILY RNA-binding domain, RBD 636 744 IPR035979 GO:0003676
Lele35g0109 955 PANTHER RNA-BINDING MOTIF PROTEIN 14B 14 954 - -
Lele35g0109 955 FunFam RNA-binding motif protein 28 644 739 - -
Lele35g0109 955 MobiDBLite consensus disorder prediction 448 471 - -
Lele35g0109 955 CDD RRM2_RBM28_like 273 349 - -
Lele35g0109 955 MobiDBLite consensus disorder prediction 369 420 - -
Lele35g0109 955 CDD RRM3_RBM28_like 494 574 - -
Lele35g0109 955 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 493 576 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g0109 Lele-ChrLele35 674567 681139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g0109 21 97 Eukaryotic Initiation Factors Gene Family AT3G11400 35.065 1.20e-07 52.8