Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g0108 ATGGCTAAACCGAAGGCTCCCAGACGAACCCTAGAGTCATACACAGTCAAACACATAAGCAAAACCGTTAGAGCTGGCGACTGCGTTCTTATGCGGCCCTCCGAGCCGTCGAAACCTTCCTACGTGGCTAGGATCGAGCGGATCGAGGCCGACTCTCGAGGCGCGAACGTTAAGGTTCAGGTCCGTTGGTACTATCGGCCGGAGGAGTCTATCGGTGGCCGTCGACAGTTCCACGGTTCTAAAGAGGTTTTCCTCTCTGATCACTTTGACGTTCAGAGCGCCGACACGATCGAAGGCAAGTGTACGGTTCACAGTTTTAAGGGCTACACGAAGCTTGATGCTGTCGGAAATGACGATTTCTTCTGCCGTTTCGAATATAATTCCGCCACCGGAGCATTCAATCCAGATAGAGTTGCCGTGTATTGCAAATGTGAGATGCCCTACAACCCCGATGACCTAATGGTTCAGTGTGAGGGCTGTAGTGATTGGTTTCATCCTGCTTGTATAGACATGACTGTGGAGGAAGCCAAAAGACTTGACCACTTCTTCTGTGAAAGTTGTTCTGCGGAAGATCAAAATAAGTTGCCAAATTCTCATGCTGGGAGACATTCAGATACAAAGGTGGATACAAAACGCCGTCGAAGGTACCAAACAAACACGGAGGCGATGTTTTCTGCAGTGAACTGTAACCTTTCTACTTCTACAGAAAGACCGGTTTGGAAATATGTTTGTCGTATCTATTTGGTTTTAAGACTTATCCTGTTTACTTTGAAAGTCGAGGATGCGTTTTCTTGTTTGTAA 801 0.4744 MAKPKAPRRTLESYTVKHISKTVRAGDCVLMRPSEPSKPSYVARIERIEADSRGANVKVQVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADTIEGKCTVHSFKGYTKLDAVGNDDFFCRFEYNSATGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIDMTVEEAKRLDHFFCESCSAEDQNKLPNSHAGRHSDTKVDTKRRRRYQTNTEAMFSAVNCNLSTSTERPVWKYVCRIYLVLRLILFTLKVEDAFSCL 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g0108 266 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Lele35g0108 266 MobiDBLite consensus disorder prediction 196 212 - -
Lele35g0108 266 MobiDBLite consensus disorder prediction 193 212 - -
Lele35g0108 266 PANTHER OS08G0421900 PROTEIN 5 204 - -
Lele35g0108 266 FunFam Bromo-adjacent homology (BAH) domain-containing protein 134 205 - -
Lele35g0108 266 SUPERFAMILY FYVE/PHD zinc finger 131 191 IPR011011 -
Lele35g0108 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 205 IPR013083 -
Lele35g0108 266 SMART PHD_3 141 188 IPR001965 -
Lele35g0108 266 Pfam PHD-finger 141 189 IPR019787 -
Lele35g0108 266 Gene3D - 2 133 IPR043151 -
Lele35g0108 266 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Lele35g0108 266 Pfam BAH domain 22 136 IPR001025 GO:0003682
Lele35g0108 266 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Lele35g0108 266 SMART BAH_4 21 137 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g0108 Lele-ChrLele35 670112 673662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g0108 41 139 Core DNA Replication Machinery Family AT4G14700 30.303 1.54e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele35g0108 BAH 5.3e-22 No_clan