Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele35g0104 | ATGCCTGTTCGAACTTGCGACTTAGCAGTTAATAGCGTAAAGCTCACTTGCCAACAAGCCGCTCTACGCAAGAAAAAGGTTTCGCAGTTTGTCATCTCAGAAGCAAAGCTGCAGAAGAAAAGGAAAGAGCAGCGAGCTAGTAAAGCGTGTGTCGATGCTTTAGTTGCTAACGCCTTGGGAGAATGGGAGCTTTACCTTCCCTTCTTTCTCTCTCAACTGTTGTGCTCGTTGCTTTCACAAATAGTCATGGCTTCCGACTCTTCTCCGACGAATTTCAACAACGGTCCTTCATCTCCCGATGATTCATATTCCAGCCCAATCGGTAACACATTATCCTCTCCCGGAGATGCTGCTCGCCACAGAGGGCGCCGGCGTTCGTCGACGCCGTCTGCATTCGCAACTCCTCCGTCTAATCGATCTCGATTCGCCTCCTCCGATGCTACCCCATCTCCATCGAGGTCCAGGCAAAGGGGAGGTGGTAGGAGAGCGTCTATGTCCACCCCTGTTGCAGCCACGCCCACATCCACTGATGACGCTCCCATGTCATCAGAAGGCGGAGAGGGTTACAATGCAGACGATATTAGGCCTACCTTCGTCTGGGGTACTAATATAAGCGTTGAAGACGTGCATGAGGCGATTCAGAGGTTTTTAAAGCACTTCAGAGAGAAATCATCTCAGAGCGATGGGCTGCATATGGAGGGGAAATATGAGACGGCTATCAAACAAGTCATTGAAATGGAGGGAGAGTCACTAGACGTCGATGCACACGAAGTATTTGATTATGATCCGGACTTGTACACAAAAATGGTCAGATACCCGCTCGAGGTTCTTGCAATTTTTGATTTGGTTCTGATGAATATGGTTAGTAGAATCAACCCGTTGTTCGAGAAGCACATTCAAACTCGAATTTTTAATCTAAAAACCTCGACTTCGATGAGAAATTTGAATCCATCTGATATTGAGAGGATGGTATCATTGAAGGGAATGATTATTCGATGTAGCTCAATTATACCAGAAATCAAGGAAGCTATATTTAGATGTCTCGTGTGTGGATACTGCTCAGAACCGGTTGCCGTAGAGAGAGGGAGAATAGCTGAACCTACTAAATGTGTGAGGGAAGAGTGTCAAGCCAGAAACTCCATGACACTTGTTCACAACCGATGCAGTTTCACTGACAAGCAAATTGTGAGGCTCCAGGAGACCCCTGATGAGATACCTGAAGGGGGAACACCACACACAGTAAGCTTGCTGATGCATGACAAGCTGGTGGATGCTGGAAAGCCGGGTGACAGAGTTGAGGTGACTGGTATATATAGGGCTATGAGTGTCAGGGTTGGACCAACTCAAAGAACTGTTAAATCACTGTTCAAGACTTATGTTGACTGTCTTCATATTAAGAAGACTGATAAGTCAAGAATGATGTCAGAGGATGCAATGGATGTTGAAACTAGCCTGGGCAACAGAAATACAAAAGAAATTCATTTTGATGAAGAGAAGGTGGCTCAACTAAAGGAGCTCTCAAAACAGCCGGATATATATGAAAGGTTGACAAAGTCATTGGCTCCAAACATCTGGGAGCTAGATGATGTGAAGAAAGGCCTTCTTTGCCAACTTTTTGGTGGAAATGCTTTGAAGTTGGCATCTGGCGCTAACTTCCGTGGTGATCTTAATATTTTACTAGTCGGTGATCCTGGAACCAGCAAGTCCCAGCTGCTCCAGTACATACATAAACTTTCTCCACGTGGCATTTACACAAGTGGAAGGGGGAGCTCTGCTGTTGGACTGACTGCTTATGTGACCAAAGATCCTGAAACAGGCGAAACTGTTCTCGAGAGTGGCGCTCTAGTTTTAAGTGACAGAGGCATCTGCTGTATAGATGAATTTGACAAAATGTCTGAGAATGCCAGGAGCATGTTACATGAGGTGATGGAACAACAAACTGTTTCAATAGCAAAAGCAGGTATTATCGCCTCCCTCAATGCCAGGACTTCAGTGTTGGCTTGTGCGAATCCCAGTGGGTCACGATATAACCCTCGCTTGTCTGTCATTGACAACATACAACTTCCTCCTACACTTCTGTCCAGGTTTGATTTGATCTACTTAATTCTTGACAAGGCTGATGAACAAACAGATAGACGGCTTGCCAAGCATATTGTTTCCTTACACTTTGAGAATCCTGAGAGCTTAGAGCAAGATGTGTTGGATCTTCCTACGTTAACTGCTTATGTGAGCTATGCTCGAAAGCATATACACCCACAACTATCTGATGAAGCTGCTGAAGAATTGACTAGAGGTTACGTTGAGATAAGAAGGAGAGGAAATTTTCCAGGGAGTAGCAAAAGGGTGATAACAGCAACACCAAGGCAGATTGAGAGTCTAATACGGCTTAGCGAAGCCTTGGCTCGGATTCGCTTCTCAGAATGGGTGGAGAAGCGGGATGTAATGGAGGCATTTCGGCTTCTAGAAGTTGCAATGCAGCAGTCTGCCACAGATCACTCTACTGGAACGATTGACATGGATCTTATTACCACTGGAGTTTCTGCAAGTGAAAGGATGAGACGAGAAAGTCTGGTACAAGCAACTCGCAACATAATCATGGAGAAGATGCAAATTGGGGGACCATCAATGAGATTATTGGAGTTACTGGAAGAGTTGAAGAAACAGAACGCCAGTGAACTCCACCTCAGTGATCTAAGAAATGCAGTTGCAACTTTGGCCAGCGAAGGATTTGTTGCTCTGCATGGTGACGGTATGAATTGCATAATTGTGACTGAAAATTTGAGAATAGCAATCATTTCGACACCGATCCTGAAACGTCAAGTCAGAATTGAAGCACTCTGA | 2841 | 0.4523 | MPVRTCDLAVNSVKLTCQQAALRKKKVSQFVISEAKLQKKRKEQRASKACVDALVANALGEWELYLPFFLSQLLCSLLSQIVMASDSSPTNFNNGPSSPDDSYSSPIGNTLSSPGDAARHRGRRRSSTPSAFATPPSNRSRFASSDATPSPSRSRQRGGGRRASMSTPVAATPTSTDDAPMSSEGGEGYNADDIRPTFVWGTNISVEDVHEAIQRFLKHFREKSSQSDGLHMEGKYETAIKQVIEMEGESLDVDAHEVFDYDPDLYTKMVRYPLEVLAIFDLVLMNMVSRINPLFEKHIQTRIFNLKTSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIKEAIFRCLVCGYCSEPVAVERGRIAEPTKCVREECQARNSMTLVHNRCSFTDKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYVDCLHIKKTDKSRMMSEDAMDVETSLGNRNTKEIHFDEEKVAQLKELSKQPDIYERLTKSLAPNIWELDDVKKGLLCQLFGGNALKLASGANFRGDLNILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIQLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPESLEQDVLDLPTLTAYVSYARKHIHPQLSDEAAEELTRGYVEIRRRGNFPGSSKRVITATPRQIESLIRLSEALARIRFSEWVEKRDVMEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRESLVQATRNIIMEKMQIGGPSMRLLELLEELKKQNASELHLSDLRNAVATLASEGFVALHGDGMNCIIVTENLRIAIISTPILKRQVRIEAL | 946 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele35g0104 | 946 | Pfam | MCM P-loop domain | 500 | 722 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele35g0104 | 946 | SUPERFAMILY | Nucleic acid-binding proteins | 231 | 462 | IPR012340 | - | |
| Lele35g0104 | 946 | SMART | mcm | 308 | 826 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele35g0104 | 946 | Gene3D | - | 339 | 391 | - | - | |
| Lele35g0104 | 946 | Gene3D | - | 831 | 915 | IPR036388 | - | |
| Lele35g0104 | 946 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 641 | 654 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele35g0104 | 946 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 692 | 700 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele35g0104 | 946 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 553 | 568 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele35g0104 | 946 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 665 | 677 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele35g0104 | 946 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 613 | 627 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele35g0104 | 946 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 210 | 884 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele35g0104 | 946 | FunFam | DNA helicase | 339 | 391 | - | - | |
| Lele35g0104 | 946 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 674 | 691 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Lele35g0104 | 946 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 385 | 397 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Lele35g0104 | 946 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 528 | 539 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Lele35g0104 | 946 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 334 | 347 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Lele35g0104 | 946 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 826 | 835 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Lele35g0104 | 946 | Pfam | MCM N-terminal domain | 211 | 308 | IPR027925 | - | |
| Lele35g0104 | 946 | Gene3D | - | 312 | 451 | IPR012340 | - | |
| Lele35g0104 | 946 | MobiDBLite | consensus disorder prediction | 89 | 192 | - | - | |
| Lele35g0104 | 946 | CDD | MCM4 | 515 | 824 | - | - | |
| Lele35g0104 | 946 | ProSiteProfiles | MCM family domain profile. | 512 | 718 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele35g0104 | 946 | Pfam | MCM OB domain | 312 | 441 | IPR033762 | - | |
| Lele35g0104 | 946 | Gene3D | - | 490 | 830 | IPR027417 | - | |
| Lele35g0104 | 946 | FunFam | DNA helicase | 493 | 831 | - | - | |
| Lele35g0104 | 946 | Pfam | MCM AAA-lid domain | 738 | 824 | IPR041562 | - | |
| Lele35g0104 | 946 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 523 | 838 | IPR027417 | - | |
| Lele35g0104 | 946 | MobiDBLite | consensus disorder prediction | 127 | 181 | - | - | |
| Lele35g0104 | 946 | ProSitePatterns | MCM family signature. | 621 | 629 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Lele35g0104 | 946 | MobiDBLite | consensus disorder prediction | 89 | 112 | - | - | |
| Lele35g0104 | 946 | Gene3D | - | 203 | 306 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele35g0104 | Lele-ChrLele35 | 640426 | 649512 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele35g0104 | 83 | 916 | Core DNA Replication Machinery Family | AT2G16440 | 75.385 | 0.0 | 1283 |