Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g0103 ATGGGAATTATGAAGCAATTAGAAGTTTTCTTAAATTGCAAAATTCCACACACACTCTCTCTCCTTTCCTTCCCATTCTCCGCTAAAACTACAGACACTACACAAGCCAGAGCCAGATCTCATCTCAAGAGAGCAATTGGATTGTGCAGAGACTGTGTTTGTGATACGGTGATTGAGGAAGATGTTGACGAAGTTCGAGACCAAAATGGCGTGATCCAGCTATGGGACTACCGAATGGGCACCCTGATTGACAGATTCGATGAGCATGATGGACCTGTTCGAGGTGTTCATTTCCATAACTCTCAGCCTCTCTTTGTTTCTGGAGGGGATGATTACAAGATTAAGGTTTGGAACTACAAGTTGCACAGATGTTTGTTTACTCTTTTAGGACACCTCGATTATATTCGTACGGTGCAATTTCATCACGAAAACCCATGGATTGTGAGTGCTAGTGATGACCAGACCATTCGCATTTGGAACTGGCAGTCACGTACCTGTATGTCTGTTTTAACTGGCCACAACCATTACGTTATGTGTGCCTTGTTCCACCCAAAAGAGGATCTTGTCGTGTCAGCCTCCTTGGATCAGACTGTTCGTGTATGGGATATTGGCGCTCTCAAGAGGAAGTCTGGGTCTCCTGCGGATGACATACTGCGACTGAGTCAAATGAACACAGATCTCTTTGGTGGCGTTGATGCGGTTGTTAAGTACGTCTTGGAAGGTCATGATCGTGGTGTCAATTGGGCTTCATTTCATCCCACACTGCCTCTCATTGTCTCAGGAGCTGATGACCGGCAACTGAAACTCTGGAGGATGAATGACACTAAAGCATGGGAAGTTGACACGTTGAGAGGGCACATGAATAATGTTTCATGCGTTATGTTCCATGCCAAACATGATATCATTGTGTCAAATTCTGAGGATAAAAGCATTCGTGTATGGGATGCAACAAAGCGGACTGGAATTCAAACATTCCGCCGAGAGCATGACCGATTTTGGATTCTTGCAGCACATCCTGAAATGAATCTGTTGGCAGCTGGTCATGACAATGGCATGATTGTCTTTAAGCTGGAGAGAGAAAGGCCAGCTTTTGTAGTTAGTGGTGACTCTCTGTTCTTCACAAAAGATAGGTTTTTACGTTTTCATGAATTTTTAACGCAGAGAGAGACACAAGTACTCCCAATTCGACGACCTGGTTCTTTAAACCTCAATCAAAGCCCAAAGACTCTTTCTTATAGCCCAACTGAAAATGCTGTTCTTCTTTGTTCGGATGTTGATGGTGGATCTTATGAGTTGTACTCTATATCCAAGGACAGTTTGGGCAGGGGTGACATGCAAGAAGCAAGGAGAGGACTGGGAGGATCAGCGGTCTTTGTGGCTCGAAACAGATTTGCTGTGCTTGACAAAAGCAACAACCAAGTCCTTGTAAAGAATTTGAAGAATGAGCTCGTAAAAAAAAGTGCCCTCCCAATTCCCACCGATGCTATTTTCTATGCTGGAACAGGGAACTTGCTGTGTAGGTCAGAGGACAGGGTTGTTATATTTGATCTTCAGCAGAGAATTATTGTTGGTGATCTTCAAACCCCTTTTATTAAGTATGTCGTCTGGTCTAATGAAATGGAAAATGTTGCCTTACTCAGCAAGCACGCCATTATTATTGCAAGCAAGAAGCTTGTGCACCAGTGCACACTCCATGAAACAATTCGTGTAAAAAGTGGAGGCTGGGATGACAATGGCGTATTTATTTACACAACATTAAATCACATCAAATACTGTCTTCCTAGCGGGGATAGTGGAATAATTAAAACACTTGATGTCCCCATTTATATTGCGAAGGTTTCTGGAAACACAATATTCTGCTTGGATCGGGATGGTAAATGCAAATCTATTGTCATTGATGCGACTGAATATATTTTTAAACTTTCTCTGTTAAAGAAAAGATATGACCTTGTCATGAATGTGATAAGGAATTCACAGCTTTGTGGGCAGGCTATGATTGCTTATCTACAACAGAAAGGATTTCCTGAGGTTGCTCTTCATTTTGTGAAAGATGAGAGAACTCGATTTAATTTGGCCTTAGAGAGTGGGAACATTCAAGCTGGAGTTGCATCAGCTACAGCAATTGATGAGAAAGATCATTGGTATCGTTTGGGGGTGGAGGCACTTCGTCAAGGAAATGCTGGTATAGTAGAGTATGCATACCAGAGGACCAAAAATTTTGAGAGACTGTCTTTCCTTTATCTCATCACTGGTAACATGGACAAACTTTCCAAGATGTTGAAAATCGCTGAAGTTAAAAATGATGTGATGGGTCAGTTTCACAATGCCTTGTATCTGGGTGATATCTACGAGCGTGTTAAGATTTTGGAAGCGGTGGGTCATTTGCCTCTTGCTTATGTCACTGCATCGGTCCATGGGCTACGTGATGTTGCTGAACGTATTGCAACTGAACTTGGGGAGAATGTCCCACCTTTGCCTGATGGAAAAACGCCGTCCCTTTTGATGCCACCATCACCTGTCATGTCCGGTGGTGATTGGCCCCTTCTAAGGGTCATGCGAGGCATCTTTGAAGGGGGCTTTGACAATATTGGTCAGGCTTCTGCTGATGAAGAGTATGAGGCTGCTGATGGAGATTGGGGTGAGGAGCTTGACATGGTTGATGTGGATGGTTTACAGAATGGAGACGTTTCTGCAATTTTGGAGGATGGAGAAGTGCGTGAAGATAACGATGAAGAGGATGGATGGGAGATGGAAGACTTAGAGCTGCCTCCTGAAGCTGACACTCCAAAATCTTCCTCCGGTATGCGATCTTCAGTTTTTGTTGCCCCACAACCTGGCATGCCGGTAAGCCAGATATGGATCCAGAGGTCATCTCTTGCAGCTGATCATGCTGCTGCTGGAAATTTTGATACTGTAATGAGGCTACTGAACCGACAACTTGGGATTAAAAATTTTGCCCCCTTGAGATCCATGTTTCTTGATCTTTATAGCAGCAGCCATTCCTATCTGCTTGCATTTTCGTCTGCTCCAATAATAACACTTGCAGTTGAAAGAGGTTGGACTCAGTCATCTAGTCCAAATGTAAGAGGCCCACCTGCTCTTCCTTTCAAGTTGTCCCAACTGGATGAAATGCTCAAAGCTGGTTATAAGTTAACAACAGCCGGGAAATTCACTGAAGCTCTACGGACATTCATTAATATCCTTCATACAATCCCTTTGATTGTAGTTGAGTCAAGGAGAGACGTGGATGATGTGAAGGAATTGATTATCATAGTCAAAGAGTATGTTTTGGGTCTGAAGATAGAGCTGAAGAGGAGGGAAATTAAGGATGACCCAGCACGCCAGCAGGAACTTGCAGCATATTTCACCCATTGCAACCTTCAGACCCCTCACTTGAGGCTGGCTTTGCTGAATGCAATGTCTGTCTGCTACAAGGCAAAGAACCTTTCCACAGCTGCAAACTTTGCCAGGAGGCTACTTGAGACCAATCCTACTATTGAAAACCAAGCTAAGACTGCTAGGCAAGTACTGGCAGCTGCAGAAAGGAATATGACTGATGCCACACAACTGAACTATGATTTCCGAAACCCATTTGTGACTTGTGGTGCAACCTATGTACCAATTTATCGAGGACAGAAGGATATCTCATGCCCATATTGCATGTCCCGTTTTGTGCCAAGCCAGGAGGGGCAGCTTTGTGCCGTCTGTGATCTTGCAGTGATTGGCGCAGATGCTTCTGGATTACTCTGTTCACCTTCCCAAGTAAGAAGACGCCATAGAGAGCATCATCATCCTCATTTCTCTAAAAGGCACAATCCCTATCCACCAGATAAAAAGGATGAGTTCAAGTTTCCAGGTAGGGTGAGTATGACGGCCATGTTTCGGTGCGTACAAGTGCGATCAGATGATGATTGGGTGAGTGAATTTGCGTACCATACGTCGGTGAGGATTGGAGGGCATGTGTTTTGTGGTCTTCTGTATGATCAAGGCCCTTCTCATAGTGCCGTTGCTGAGAGCTCTTCCTCAGTCCCTCTTCTTCAGCATAACGATCTAATCAACGTAGCAACACAGACGACCCATAATATTGATGCTGCAACAATGGCATCTTCTTCTGCTCGTGACTCTATCTTTCATTATCCTTTTCCCATACCTGCTATGCCCTATTTCTCCAACCCCCAACCTTAA 4185 0.4411 MGIMKQLEVFLNCKIPHTLSLLSFPFSAKTTDTTQARARSHLKRAIGLCRDCVCDTVIEEDVDEVRDQNGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQSRTCMSVLTGHNHYVMCALFHPKEDLVVSASLDQTVRVWDIGALKRKSGSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQLKLWRMNDTKAWEVDTLRGHMNNVSCVMFHAKHDIIVSNSEDKSIRVWDATKRTGIQTFRREHDRFWILAAHPEMNLLAAGHDNGMIVFKLERERPAFVVSGDSLFFTKDRFLRFHEFLTQRETQVLPIRRPGSLNLNQSPKTLSYSPTENAVLLCSDVDGGSYELYSISKDSLGRGDMQEARRGLGGSAVFVARNRFAVLDKSNNQVLVKNLKNELVKKSALPIPTDAIFYAGTGNLLCRSEDRVVIFDLQQRIIVGDLQTPFIKYVVWSNEMENVALLSKHAIIIASKKLVHQCTLHETIRVKSGGWDDNGVFIYTTLNHIKYCLPSGDSGIIKTLDVPIYIAKVSGNTIFCLDRDGKCKSIVIDATEYIFKLSLLKKRYDLVMNVIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQAGVASATAIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDIYERVKILEAVGHLPLAYVTASVHGLRDVAERIATELGENVPPLPDGKTPSLLMPPSPVMSGGDWPLLRVMRGIFEGGFDNIGQASADEEYEAADGDWGEELDMVDVDGLQNGDVSAILEDGEVREDNDEEDGWEMEDLELPPEADTPKSSSGMRSSVFVAPQPGMPVSQIWIQRSSLAADHAAAGNFDTVMRLLNRQLGIKNFAPLRSMFLDLYSSSHSYLLAFSSAPIITLAVERGWTQSSSPNVRGPPALPFKLSQLDEMLKAGYKLTTAGKFTEALRTFINILHTIPLIVVESRRDVDDVKELIIIVKEYVLGLKIELKRREIKDDPARQQELAAYFTHCNLQTPHLRLALLNAMSVCYKAKNLSTAANFARRLLETNPTIENQAKTARQVLAAAERNMTDATQLNYDFRNPFVTCGATYVPIYRGQKDISCPYCMSRFVPSQEGQLCAVCDLAVIGADASGLLCSPSQVRRRHREHHHPHFSKRHNPYPPDKKDEFKFPGRVSMTAMFRCVQVRSDDDWVSEFAYHTSVRIGGHVFCGLLYDQGPSHSAVAESSSSVPLLQHNDLINVATQTTHNIDAATMASSSARDSIFHYPFPIPAMPYFSNPQP 1394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g0103 1394 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 86 118 - -
Lele35g0103 1394 Pfam Coatomer (COPI) alpha subunit C-terminus 853 1256 IPR010714 GO:0005198|GO:0005515|GO:0006886|GO:0016192|GO:0030126
Lele35g0103 1394 MobiDBLite consensus disorder prediction 904 922 - -
Lele35g0103 1394 Pfam WD domain, G-beta repeat 123 160 IPR001680 GO:0005515
Lele35g0103 1394 Pfam WD domain, G-beta repeat 237 270 IPR001680 GO:0005515
Lele35g0103 1394 Pfam WD domain, G-beta repeat 84 118 IPR001680 GO:0005515
Lele35g0103 1394 Pfam WD domain, G-beta repeat 165 202 IPR001680 GO:0005515
Lele35g0103 1394 Pfam WD domain, G-beta repeat 280 315 IPR001680 GO:0005515
Lele35g0103 1394 PANTHER COATOMER 68 368 - -
Lele35g0103 1394 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 283 315 - -
Lele35g0103 1394 ProSiteProfiles Trp-Asp (WD) repeats profile. 128 169 IPR001680 GO:0005515
Lele35g0103 1394 Gene3D - 678 850 - -
Lele35g0103 1394 FunFam Coatomer subunit alpha 65 358 - -
Lele35g0103 1394 ProSiteProfiles Trp-Asp (WD) repeats profile. 239 280 IPR001680 GO:0005515
Lele35g0103 1394 Coils Coil 1170 1190 - -
Lele35g0103 1394 CDD WD40 68 356 - -
Lele35g0103 1394 Pfam Domain of unknown function (DUF702) 1254 1332 - -
Lele35g0103 1394 Pfam Coatomer WD associated region 386 806 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Lele35g0103 1394 SUPERFAMILY WD40 repeat-like 68 354 IPR036322 GO:0005515
Lele35g0103 1394 ProSiteProfiles Trp-Asp (WD) repeats profile. 283 324 IPR001680 GO:0005515
Lele35g0103 1394 MobiDBLite consensus disorder prediction 1259 1278 - -
Lele35g0103 1394 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 170 203 - -
Lele35g0103 1394 FunFam Coatomer subunit alpha 678 850 - -
Lele35g0103 1394 Gene3D - 65 358 IPR015943 GO:0005515
Lele35g0103 1394 PRINTS G protein beta WD-40 repeat signature 147 161 IPR020472 -
Lele35g0103 1394 PRINTS G protein beta WD-40 repeat signature 189 203 IPR020472 -
Lele35g0103 1394 PRINTS G protein beta WD-40 repeat signature 302 316 IPR020472 -
Lele35g0103 1394 ProSitePatterns Trp-Asp (WD) repeats signature. 189 203 IPR019775 -
Lele35g0103 1394 MobiDBLite consensus disorder prediction 901 936 - -
Lele35g0103 1394 ProSiteProfiles Trp-Asp (WD) repeats profile. 86 127 IPR001680 GO:0005515
Lele35g0103 1394 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 239 273 - -
Lele35g0103 1394 SMART WD40_4 276 315 IPR001680 GO:0005515
Lele35g0103 1394 SMART WD40_4 232 271 IPR001680 GO:0005515
Lele35g0103 1394 SMART WD40_4 163 202 IPR001680 GO:0005515
Lele35g0103 1394 SMART WD40_4 318 356 IPR001680 GO:0005515
Lele35g0103 1394 SMART WD40_4 79 118 IPR001680 GO:0005515
Lele35g0103 1394 SMART WD40_4 121 160 IPR001680 GO:0005515
Lele35g0103 1394 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 128 160 - -
Lele35g0103 1394 ProSiteProfiles Trp-Asp (WD) repeats profile. 170 203 IPR001680 GO:0005515
Lele35g0103 1394 SUPERFAMILY DPP6 N-terminal domain-like 284 603 - -
Lele35g0103 1394 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 1283 1331 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g0103 Lele-ChrLele35 629457 639358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g0103 101 358 Miscellaneous Gene Families AT5G08390 24.806 2.98e-22 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lele35g0103 Coatomer_WDAD 5.9e-127 CL0186